1. Home
  2. Species
  3. Populus trichocarpa
  4. Sequence
  5. Potri.003G191000

Potri.003G191000


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Populus release: Potri.003G191000
Cluster HCCA clusters: cluster_0035

Target Alias Description ECC score Gene Family Method Actions
123298 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
84339 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
98955 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
A4A49_05242 No alias pentatricopeptide repeat-containing protein 0.03 Orthogroups_2024-Update
At2g39620 No alias Pentatricopeptide repeat-containing protein At2g39620... 0.03 Orthogroups_2024-Update
Bradi2g62320 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Bradi3g59950 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Bradi4g28137 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.02G087100 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.14G194400 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.03 Orthogroups_2024-Update
HORVU2Hr1G035330.2 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU4Hr1G032070.2 No alias Unknown function 0.04 Orthogroups_2024-Update
HORVU5Hr1G047290.1 No alias Unknown function 0.02 Orthogroups_2024-Update
LOC_Os01g45840 No alias CRR2, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os07g13540 No alias pentatricopeptide repeat domain containing protein,... 0.02 Orthogroups_2024-Update
MA_115669g0020 No alias (at4g18750 : 620.0) Encodes a pentatricopeptide (PPR)... 0.03 Orthogroups_2024-Update
MA_43615g0010 No alias (at1g11290 : 687.0) Pentatricopeptide Repeat Protein... 0.02 Orthogroups_2024-Update
MA_8893194g0010 No alias (at5g52630 : 608.0) Encodes a member of the DYW... 0.02 Orthogroups_2024-Update
PSME_00015055-RA No alias (at1g11290 : 619.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update
PSME_00030552-RA No alias (at4g18750 : 502.0) Encodes a pentatricopeptide (PPR)... 0.02 Orthogroups_2024-Update
PSME_00056153-RA No alias (at2g13600 : 519.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
PSME_00056351-RA No alias (at2g03880 : 544.0) Pentatricopeptide repeat (PPR)... 0.02 Orthogroups_2024-Update
Pp1s68_207V6 No alias ppr gene for putative pentatricopeptide repeat-like protein PPR 0.03 Orthogroups_2024-Update
Seita.2G047600.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Seita.5G424500.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.8G097200.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Seita.9G015400.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.9G162400.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.001G016100.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.001G025800.1 No alias RNA editing factor *(CRR22) 0.02 Orthogroups_2024-Update
Sobic.001G058400.1 No alias RNA editing factor *(OTP85) 0.03 Orthogroups_2024-Update
Sobic.002G007000.2 No alias RNA editing factor *(ELI1) 0.02 Orthogroups_2024-Update
Sobic.003G223000.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.009G250700.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.010G153600.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Solyc09g009950 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Solyc11g071370 No alias Pentatricopeptide repeat-containing family protein (AHRD... 0.03 Orthogroups_2024-Update
Sopen03g026730 No alias PPR repeat 0.02 Orthogroups_2024-Update
Sopen09g031050 No alias PPR repeat 0.03 Orthogroups_2024-Update
Sopen10g030830 No alias PPR repeat 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR032867 DYW_dom 679 802
IPR002885 Pentatricopeptide_repeat 405 452
IPR002885 Pentatricopeptide_repeat 203 248
IPR002885 Pentatricopeptide_repeat 507 552
IPR002885 Pentatricopeptide_repeat 304 351
IPR002885 Pentatricopeptide_repeat 580 604
IPR002885 Pentatricopeptide_repeat 378 403
IPR002885 Pentatricopeptide_repeat 479 504
IPR002885 Pentatricopeptide_repeat 106 151
No external refs found!