1. Home
  2. Species
  3. Populus trichocarpa
  4. Sequence
  5. Potri.003G193600

Potri.003G193600


Description : PENTATRICOPEPTIDE REPEAT 596


Gene families : OG_42_0000146 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000146_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Populus release: Potri.003G193600
Cluster HCCA clusters: cluster_0027

Target Alias Description ECC score Gene Family Method Actions
421992 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
428276 No alias PENTATRICOPEPTIDE REPEAT 596 0.04 Orthogroups_2024-Update
Bradi3g30090 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Brara.C02834.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Brara.E02579.1 No alias RNA editing factor *(POCO) 0.04 Orthogroups_2024-Update
Glyma.07G119200 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
Glyma.10G026151 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.19G129900 No alias PENTATRICOPEPTIDE REPEAT 596 0.02 Orthogroups_2024-Update
HORVU2Hr1G120330.3 No alias Unknown function 0.05 Orthogroups_2024-Update
LOC_Os01g19490 No alias pentatricopeptide, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os10g35750 No alias pentatricopeptide, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os10g35760 No alias pentatricopeptide, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os12g07260 No alias PPR repeat domain containing protein, putative, expressed 0.02 Orthogroups_2024-Update
Potri.013G011300 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Seita.2G083900.1 No alias RNA editing factor *(POCO) 0.04 Orthogroups_2024-Update
Seita.5G027300.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sopen01g031100 No alias PPR repeat 0.02 Orthogroups_2024-Update
Sopen02g023180 No alias PPR repeat 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 467 490
IPR002885 Pentatricopeptide_repeat 504 531
IPR002885 Pentatricopeptide_repeat 433 460
IPR002885 Pentatricopeptide_repeat 244 301
No external refs found!