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  5. Potri.004G043200

Potri.004G043200


Description : DNA-directed RNA polymerase family protein


Gene families : OG_42_0000798 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000798_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Populus release: Potri.004G043200
Cluster HCCA clusters: cluster_0034

Target Alias Description ECC score Gene Family Method Actions
A4A49_19438 No alias dna-directed rna polymerases iv and v subunit 2 0.03 Orthogroups_2024-Update
At3g18090 No alias nuclear RNA polymerase D2B [Source:TAIR;Acc:AT3G18090] 0.03 Orthogroups_2024-Update
Bradi1g13720 No alias DNA-directed RNA polymerase family protein 0.03 Orthogroups_2024-Update
PSME_00007346-RA No alias (at4g21710 : 1979.0) Encodes the unique second-largest... 0.03 Orthogroups_2024-Update
Pp1s13_317V6 No alias rna polymerase ii second largest subunit 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan predictions
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA InterProScan predictions
BP GO:0006351 transcription, DNA-templated IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR007120 DNA-dir_RNAP_su2_dom 721 1091
IPR007641 RNA_pol_Rpb2_7 1093 1184
IPR007642 RNA_pol_Rpb2_2 214 405
IPR007646 RNA_pol_Rpb2_4 577 638
IPR007647 RNA_pol_Rpb2_5 663 714
IPR007644 RNA_pol_bsu_protrusion 44 453
IPR007645 RNA_pol_Rpb2_3 478 542
No external refs found!