Sopen12g002860

Description : MuDR family transposase

Gene families : OG_42_0000103 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000103_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen12g002860
Cluster	HCCA clusters: Cluster_235

Target	Alias	Description	ECC score	Gene Family Method
Bradi1g37775	No alias	Function unknown	0.04	Orthogroups_2024-Update
LOC_Os10g09900	No alias	transposon protein, putative, unclassified, expressed	0.02	Orthogroups_2024-Update
Solyc10g055510	No alias	No description available	0.03	Orthogroups_2024-Update
Solyc12g019720	No alias	No description available	0.04	Orthogroups_2024-Update
Sopen08g017470	No alias	SWIM zinc finger	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0008270	zinc ion binding	IEA	InterProScan predictions
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR004332	Transposase_MuDR	6	69
IPR018289	MULE_transposase_dom	201	293
IPR007527	Znf_SWIM	445	480

External Links

No external refs found!