1. Home
  2. Species
  3. Populus trichocarpa
  4. Sequence
  5. Potri.004G094300

Potri.004G094300


Description : DNA LIGASE 6


Gene families : OG_42_0002339 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002339_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Populus release: Potri.004G094300
Cluster HCCA clusters: cluster_0161

Target Alias Description ECC score Gene Family Method Actions
97073 No alias DNA ligase 1 0.02 Orthogroups_2024-Update
Bradi3g29530 No alias DNA ligase 1 0.03 Orthogroups_2024-Update
Brara.F00544.1 No alias DNA replication DNA ligase *(LIG1) & DNA ligase *(LIG1)... 0.04 Orthogroups_2024-Update
HORVU1Hr1G044350.16 No alias EC_6.5 ligase forming phosphoric ester bond 0.04 Orthogroups_2024-Update
LOC_Os01g49180 No alias ATP dependent DNA ligase family protein, putative, expressed 0.03 Orthogroups_2024-Update
PSME_00016789-RA No alias (at1g66730 : 191.0) Encodes a novel plant specific DNA... 0.02 Orthogroups_2024-Update
Seita.9G212100.1 No alias DNA ligase *(LIG1) & DNA replication DNA ligase *(LIG1)... 0.03 Orthogroups_2024-Update
Sopen02g035770 No alias ATP dependent DNA ligase domain 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003910 DNA ligase (ATP) activity IEA InterProScan predictions
MF GO:0005524 ATP binding IEA InterProScan predictions
BP GO:0006281 DNA repair IEA InterProScan predictions
BP GO:0006310 DNA recombination IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR012310 DNA_ligase_ATP-dep_cent 102 322
IPR012309 DNA_ligase_ATP-dep_C 348 452
No external refs found!