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  5. Sopen12g003480

Sopen12g003480


Description : Pectinesterase


Gene families : OG_42_0000087 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000087_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen12g003480
Cluster HCCA clusters: Cluster_92

Target Alias Description ECC score Gene Family Method Actions
A4A49_00880 No alias pectinesterase qrt1 0.03 Orthogroups_2024-Update
A4A49_27669 No alias pectinesterase 2 0.04 Orthogroups_2024-Update
A4A49_28049 No alias putative pectinesterase 8 0.03 Orthogroups_2024-Update
A4A49_29596 No alias putative pectinesterase 29 0.03 Orthogroups_2024-Update
A4A49_32955 No alias putative pectinesterase 53 0.04 Orthogroups_2024-Update
At1g05310 No alias Probable pectinesterase 8... 0.03 Orthogroups_2024-Update
At2g21610 No alias Pectinesterase 11 [Source:UniProtKB/TrEMBL;Acc:A0A1P8AZ45] 0.02 Orthogroups_2024-Update
At2g47280 No alias Probable pectinesterase 66... 0.03 Orthogroups_2024-Update
At3g24130 No alias Probable pectinesterase 29... 0.03 Orthogroups_2024-Update
Brara.I00335.1 No alias pectin methylesterase 0.02 Orthogroups_2024-Update
Brara.J02514.1 No alias pectin methylesterase 0.04 Orthogroups_2024-Update
Glyma.01G006800 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.13G060900 No alias pectin methylesterase 31 0.03 Orthogroups_2024-Update
LOC_Os09g39760 No alias pectinesterase, putative, expressed 0.03 Orthogroups_2024-Update
MA_6149868g0010 No alias (at2g36710 : 275.0) Pectin lyase-like superfamily... 0.03 Orthogroups_2024-Update
PSME_00014679-RA No alias (at5g19730 : 298.0) Pectin lyase-like superfamily... 0.03 Orthogroups_2024-Update
PSME_00015802-RA No alias (at5g19730 : 209.0) Pectin lyase-like superfamily... 0.03 Orthogroups_2024-Update
PSME_00020051-RA No alias (at5g19730 : 262.0) Pectin lyase-like superfamily... 0.02 Orthogroups_2024-Update
PSME_00022041-RA No alias (at5g55590 : 238.0) Encodes a protein with pectin... 0.02 Orthogroups_2024-Update
Potri.017G054700 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Potri.018G068400 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Pp1s112_177V6 No alias pectin methylesterase 0.03 Orthogroups_2024-Update
Pp1s55_167V6 No alias pectin methylesterase 0.02 Orthogroups_2024-Update
Pp1s67_89V6 No alias pectin methylesterase 0.02 Orthogroups_2024-Update
Seita.8G237600.1 No alias pectin methylesterase 0.02 Orthogroups_2024-Update
Solyc12g008530 No alias Pectinesterase (AHRD V3.3 *** K4DBU1_SOLLC) 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0030599 pectinesterase activity IEA InterProScan predictions
BP GO:0042545 cell wall modification IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000070 Pectinesterase_cat 35 320
No external refs found!