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  5. Potri.004G178200

Potri.004G178200


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Populus release: Potri.004G178200
Cluster HCCA clusters: cluster_0002

Target Alias Description ECC score Gene Family Method Actions
At3g11460 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Orthogroups_2024-Update
Brara.A00474.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.C02940.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.J00787.1 No alias RNA editing factor *(MEF1) 0.03 Orthogroups_2024-Update
HORVU2Hr1G023100.1 No alias Unknown function 0.03 Orthogroups_2024-Update
LOC_Os06g02200 No alias pentatricopeptide, putative, expressed 0.03 Orthogroups_2024-Update
Pp1s186_64V6 No alias hypothetical protein [Oryza sativa (japonica cultivar-group)] 0.02 Orthogroups_2024-Update
Seita.3G137300.1 No alias RNA editing factor *(ECB2/VAC1) 0.02 Orthogroups_2024-Update
Seita.5G360300.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.7G164600.1 No alias RNA editing factor *(MEF12) 0.03 Orthogroups_2024-Update
Seita.9G032700.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Seita.9G339400.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Solyc01g097670 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Solyc03g051780 No alias Pectin lyase-like superfamily protein (AHRD V3.3 *** AT3G57790.2) 0.03 Orthogroups_2024-Update
Solyc08g023640 No alias Pentatricopeptide repeat-containing protein family (AHRD... 0.03 Orthogroups_2024-Update
Solyc09g010070 No alias Pentatricopeptide repeat superfamily protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Sopen02g033370 No alias PPR repeat family 0.02 Orthogroups_2024-Update
Sopen03g024500 No alias PPR repeat 0.03 Orthogroups_2024-Update
Sopen11g026910 No alias PPR repeat family 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 551 575
IPR002885 Pentatricopeptide_repeat 264 290
IPR002885 Pentatricopeptide_repeat 191 220
IPR002885 Pentatricopeptide_repeat 161 188
IPR002885 Pentatricopeptide_repeat 88 134
IPR002885 Pentatricopeptide_repeat 476 523
IPR002885 Pentatricopeptide_repeat 375 421
IPR032867 DYW_dom 651 774
No external refs found!