Sopen12g004240


Description : Reverse transcriptase (RNA-dependent DNA polymerase)


Gene families : OG_42_0000008 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen12g004240
Cluster HCCA clusters: Cluster_217

Target Alias Description ECC score Gene Family Method Actions
At3g20980 No alias Gag-Pol-related retrotransposon family protein... 0.02 Orthogroups_2024-Update
LOC_Os01g63960 No alias retrotransposon protein, putative, Ty1-copia subclass, expressed 0.02 Orthogroups_2024-Update
LOC_Os11g29950 No alias retrotransposon protein, putative, unclassified, expressed 0.02 Orthogroups_2024-Update
Sopen09g011980 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0008270 zinc ion binding IEA InterProScan predictions
BP GO:0015074 DNA integration IEA InterProScan predictions
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR014030 Ketoacyl_synth_N 1374 1619
IPR001878 Znf_CCHC 230 247
IPR025724 GAG-pre-integrase_dom 401 465
IPR001584 Integrase_cat-core 482 594
IPR014031 Ketoacyl_synth_C 1627 1740
IPR013103 RVT_2 842 1085
No external refs found!