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  5. Potri.005G000500

Potri.005G000500


Description : DEAD box RNA helicase (RH3)


Gene families : OG_42_0000844 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000844_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Populus release: Potri.005G000500
Cluster HCCA clusters: cluster_0036

Target Alias Description ECC score Gene Family Method Actions
10677 No alias DEAD box RNA helicase (RH3) 0.04 Orthogroups_2024-Update
99603 No alias putative mitochondrial RNA helicase 2 0.03 Orthogroups_2024-Update
At3g22310 No alias DEAD-box ATP-dependent RNA helicase 9, mitochondrial... 0.04 Orthogroups_2024-Update
Bradi1g03180 No alias DEAD box RNA helicase (RH3) 0.06 Orthogroups_2024-Update
Bradi4g02000 No alias putative mitochondrial RNA helicase 1 0.05 Orthogroups_2024-Update
Bradi4g35490 No alias DEAD box RNA helicase (PRH75) 0.05 Orthogroups_2024-Update
Brara.F02796.1 No alias group-II intron splicing RNA helicase *(RH3) 0.03 Orthogroups_2024-Update
Cre03.g200095 No alias P-loop containing nucleoside triphosphate hydrolases... 0.01 Orthogroups_2024-Update
Glyma.19G223600 No alias DEAD box RNA helicase (RH3) 0.03 Orthogroups_2024-Update
HORVU5Hr1G011460.1 No alias group-II intron splicing RNA helicase *(PMH) 0.03 Orthogroups_2024-Update
LOC_Os03g61220 No alias DEAD-box ATP-dependent RNA helicase 3, putative, expressed 0.02 Orthogroups_2024-Update
Mp3g17170.1 No alias RH3 plastidial RNA basal splicing factor. RNA helicase (PMH) 0.02 Orthogroups_2024-Update
Pp1s7_15V6 No alias dead deah box helicase family expressed 0.02 Orthogroups_2024-Update
Seita.9G027200.1 No alias group-II intron splicing RNA helicase *(RH3) 0.06 Orthogroups_2024-Update
Sobic.001G028100.1 No alias group-II intron splicing RNA helicase *(RH3) 0.05 Orthogroups_2024-Update
Solyc08g042050 No alias RNA helicase DEAD25 0.03 Orthogroups_2024-Update
Sopen07g023350 No alias DEAD/DEAH box helicase 0.02 Orthogroups_2024-Update
Sopen12g002280 No alias DEAD/DEAH box helicase 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0003723 RNA binding IEA InterProScan predictions
MF GO:0004386 helicase activity IEA InterProScan predictions
MF GO:0005524 ATP binding IEA InterProScan predictions
CC GO:0005634 nucleus IEA InterProScan predictions
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001650 Helicase_C 369 476
IPR001878 Znf_CCHC 755 771
IPR012562 GUCT 563 663
IPR011545 DEAD/DEAH_box_helicase_dom 157 331
No external refs found!