Potri.005G011000

Description : Tetratricopeptide repeat (TPR)-like superfamily protein

Gene families : OG_42_0010683 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0010683_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Populus release: Potri.005G011000
Cluster	HCCA clusters: cluster_0002

Target	Alias	Description	ECC score	Gene Family Method	Actions
Seita.9G425800.1	No alias	Unknown function	0.02	Orthogroups_2024-Update
Solyc01g100790	No alias	Pentatricopeptide repeat-containing protein (AHRD V3.3...	0.04	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0008270	zinc ion binding	IEA	InterProScan predictions
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR002885	Pentatricopeptide_repeat	252	300
IPR002885	Pentatricopeptide_repeat	486	532
IPR002885	Pentatricopeptide_repeat	89	136
IPR002885	Pentatricopeptide_repeat	356	384
IPR002885	Pentatricopeptide_repeat	387	416
IPR002885	Pentatricopeptide_repeat	165	185
IPR002885	Pentatricopeptide_repeat	561	585
IPR002885	Pentatricopeptide_repeat	193	223
IPR032867	DYW_dom	659	783

External Links

No external refs found!