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  5. Potri.005G063400

Potri.005G063400


Description : Pectin lyase-like superfamily protein


Gene families : OG_42_0000259 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000259_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Populus release: Potri.005G063400
Cluster HCCA clusters: cluster_0055

Target Alias Description ECC score Gene Family Method Actions
A4A49_06602 No alias putative polygalacturonase 0.03 Orthogroups_2024-Update
A4A49_11852 No alias putative polygalacturonase 0.03 Orthogroups_2024-Update
Brara.A01388.1 No alias EC_3.2 glycosylase 0.04 Orthogroups_2024-Update
Brara.F01639.1 No alias EC_3.2 glycosylase 0.04 Orthogroups_2024-Update
Glyma.06G153900 No alias Pectin lyase-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.19G213400 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
LOC_Os02g15690 No alias polygalacturonase, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os09g26800 No alias polygalacturonase, putative, expressed 0.03 Orthogroups_2024-Update
Potri.002G162400 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Solyc03g007950 No alias Pectin lyase-like superfamily protein (AHRD V3.3 *** AT4G23500.1) 0.03 Orthogroups_2024-Update
Sopen05g028340 No alias Glycosyl hydrolases family 28 0.05 Orthogroups_2024-Update
Sopen06g020290 No alias Glycosyl hydrolases family 28 0.03 Orthogroups_2024-Update
Sopen08g029810 No alias Glycosyl hydrolases family 28 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEA InterProScan predictions
BP GO:0005975 carbohydrate metabolic process IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 185 463
No external refs found!