Sopen12g005320

Description : Ring finger domain

Gene families : OG_42_0000548 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000548_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen12g005320
Cluster	HCCA clusters: Cluster_136

Target	Alias	Description	ECC score	Gene Family Method
Bradi2g50940	No alias	RING/U-box superfamily protein	0.02	Orthogroups_2024-Update
Brara.C02146.1	No alias	E3 ubiquitin ligase *(RMA/MUSE)	0.03	Orthogroups_2024-Update
Seita.7G053100.1	No alias	E3 ubiquitin ligase *(RMA/MUSE)	0.03	Orthogroups_2024-Update
Solyc01g109340	No alias	RING/U-box superfamily protein (AHRD V3.3 *** AT2G23780.3)	0.03	Orthogroups_2024-Update
Sopen10g004240	No alias	Zinc finger, C3HC4 type (RING finger)	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	IEA	InterProScan predictions

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR018957	Znf_C3HC4_RING-type	44	92

External Links

No external refs found!