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  5. Sopen12g005690

Sopen12g005690


Description : Reverse transcriptase (RNA-dependent DNA polymerase)


Gene families : OG_42_0000008 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen12g005690
Cluster HCCA clusters: Cluster_6

Target Alias Description ECC score Gene Family Method Actions
Pp1s249_4V6 No alias No description available 0.03 Orthogroups_2024-Update
Solyc01g056860 No alias No description available 0.03 Orthogroups_2024-Update
Solyc01g067050 No alias No description available 0.02 Orthogroups_2024-Update
Solyc05g021080 No alias No description available 0.03 Orthogroups_2024-Update
Solyc06g011300 No alias No description available 0.02 Orthogroups_2024-Update
Solyc07g009390 No alias No description available 0.02 Orthogroups_2024-Update
Solyc07g009400 No alias No description available 0.02 Orthogroups_2024-Update
Solyc10g054830 No alias No description available 0.02 Orthogroups_2024-Update
Sopen01g007360 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen01g026120 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen03g026850 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.05 Orthogroups_2024-Update
Sopen04g031270 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen05g015450 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen07g008090 No alias Integrase core domain 0.02 Orthogroups_2024-Update
Sopen07g015960 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen09g024610 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen09g024800 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.04 Orthogroups_2024-Update
Sopen10g015220 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen10g024570 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen11g016310 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.05 Orthogroups_2024-Update
evm.model.contig_2214.1 No alias (p10978|polx_tobac : 144.0) Retrovirus-related Pol... 0.04 Orthogroups_2024-Update
evm.model.contig_3735.2 No alias (p10978|polx_tobac : 102.0) Retrovirus-related Pol... 0.02 Orthogroups_2024-Update
evm.model.contig_4573.1 No alias no hits & (original description: no original description) 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0015074 DNA integration IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR025724 GAG-pre-integrase_dom 843 914
IPR001584 Integrase_cat-core 927 1042
IPR013103 RVT_2 1312 1553
IPR029472 Copia-like_N 408 447
No external refs found!