Potri.005G107600

Description : RNA polymerase II large subunit

Gene families : OG_42_0001434 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001434_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Populus release: Potri.005G107600
Cluster	HCCA clusters: cluster_0060

Type	GO Term	Name	Evidence	Source
CC	GO:0000428	DNA-directed RNA polymerase complex	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	InterProScan predictions
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005665	RNA polymerase II, core complex	IEA	InterProScan predictions
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006351	transcription, DNA-templated	IEA	InterProScan predictions
BP	GO:0006366	transcription by RNA polymerase II	IEA	InterProScan predictions
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
CC	GO:0030880	RNA polymerase complex	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
MF	GO:0034062	5'-3' RNA polymerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044422	organelle part	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044428	nuclear part	None	Extended
CC	GO:0044446	intracellular organelle part	None	Extended
CC	GO:0044451	nucleoplasm part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
CC	GO:0055029	nuclear DNA-directed RNA polymerase complex	None	Extended
CC	GO:0061695	transferase complex, transferring phosphorus-containing groups	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0097659	nucleic acid-templated transcription	None	Extended
MF	GO:0097747	RNA polymerase activity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1902494	catalytic complex	None	Extended
CC	GO:1990234	transferase complex	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR007066	RNA_pol_Rpb1_3	524	687
IPR007073	RNA_pol_Rpb1_7	1162	1296
IPR007081	RNA_pol_Rpb1_5	825	1417
IPR000684	RNA_pol_II_repeat_euk	1646	1659
IPR000684	RNA_pol_II_repeat_euk	1597	1610
IPR000684	RNA_pol_II_repeat_euk	1763	1776
IPR000684	RNA_pol_II_repeat_euk	1660	1673
IPR000684	RNA_pol_II_repeat_euk	1604	1617
IPR000684	RNA_pol_II_repeat_euk	1639	1652
IPR000684	RNA_pol_II_repeat_euk	1681	1694
IPR000684	RNA_pol_II_repeat_euk	1749	1762
IPR000684	RNA_pol_II_repeat_euk	1569	1582
IPR000684	RNA_pol_II_repeat_euk	1674	1687
IPR000684	RNA_pol_II_repeat_euk	1702	1715
IPR000684	RNA_pol_II_repeat_euk	1611	1624
IPR000684	RNA_pol_II_repeat_euk	1695	1708
IPR000684	RNA_pol_II_repeat_euk	1625	1638
IPR000684	RNA_pol_II_repeat_euk	1709	1722
IPR000684	RNA_pol_II_repeat_euk	1653	1666
IPR000684	RNA_pol_II_repeat_euk	1618	1631
IPR000684	RNA_pol_II_repeat_euk	1716	1729
IPR000684	RNA_pol_II_repeat_euk	1583	1596
IPR000684	RNA_pol_II_repeat_euk	1632	1645
IPR000684	RNA_pol_II_repeat_euk	1558	1568
IPR000684	RNA_pol_II_repeat_euk	1667	1680
IPR000684	RNA_pol_II_repeat_euk	1688	1701
IPR007083	RNA_pol_Rpb1_4	714	818
IPR007075	RNA_pol_Rpb1_6	891	1077
IPR007080	RNA_pol_Rpb1_1	14	350
IPR000722	RNA_pol_asu	352	520

External Links

No external refs found!

Potri.005G107600

Expression Profile

Co-expression Networks

Functional Annotation