Potri.005G119000

Description : Pentatricopeptide repeat (PPR) superfamily protein

Gene families : OG_42_0009665 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0009665_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Populus release: Potri.005G119000
Cluster	HCCA clusters: cluster_0002

Target	Alias	Description	ECC score	Gene Family Method
PSME_00036410-RA	No alias	(at2g22070 : 580.0) pentatricopeptide (PPR)...	0.02	Orthogroups_2024-Update
Solyc02g084830	No alias	Pentatricopeptide repeat-containing protein (AHRD V3.3...	0.05	Orthogroups_2024-Update
Sopen02g029500	No alias	PPR repeat	0.04	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0008270	zinc ion binding	IEA	InterProScan predictions
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR002885	Pentatricopeptide_repeat	109	156
IPR002885	Pentatricopeptide_repeat	242	290
IPR002885	Pentatricopeptide_repeat	346	393
IPR002885	Pentatricopeptide_repeat	214	237
IPR002885	Pentatricopeptide_repeat	186	212
IPR002885	Pentatricopeptide_repeat	420	444
IPR032867	DYW_dom	521	643

External Links

No external refs found!