Potri.005G164100

Description : methyl-CPG-binding domain 8

Gene families : OG_42_0004401 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004401_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Populus release: Potri.005G164100
Cluster	HCCA clusters: cluster_0074

Target	Alias	Description	ECC score	Gene Family Method	Actions
Sobic.002G234600.1	No alias	Unknown function	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	InterProScan predictions
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR017956	AT_hook_DNA-bd_motif	301	312
IPR017956	AT_hook_DNA-bd_motif	193	203
IPR017956	AT_hook_DNA-bd_motif	521	531
IPR017956	AT_hook_DNA-bd_motif	411	421
IPR001739	Methyl_CpG_DNA-bd	636	694

External Links

No external refs found!