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  5. Sopen12g006850

Sopen12g006850


Description : Core histone H2A/H2B/H3/H4


Gene families : OG_42_0000153 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000153_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen12g006850
Cluster HCCA clusters: Cluster_44

Target Alias Description ECC score Gene Family Method Actions
A4A49_29058 No alias histone h2b 0.03 Orthogroups_2024-Update
A4A49_60323 No alias putative histone h2b.1 0.05 Orthogroups_2024-Update
At2g37470 No alias Histone H2B.4 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUS0] 0.04 Orthogroups_2024-Update
At3g09480 No alias Histone H2B [Source:UniProtKB/TrEMBL;Acc:A0A178V4X7] 0.03 Orthogroups_2024-Update
At3g45980 No alias Histone H2B [Source:UniProtKB/TrEMBL;Acc:A0A178V9F6] 0.03 Orthogroups_2024-Update
At3g46030 No alias Histone H2B [Source:UniProtKB/TrEMBL;Acc:A0A178VGU6] 0.06 Orthogroups_2024-Update
At3g53650 No alias Histone H2B.8 [Source:UniProtKB/Swiss-Prot;Acc:Q9LFF6] 0.03 Orthogroups_2024-Update
At5g22880 No alias Histone H2B [Source:UniProtKB/TrEMBL;Acc:Q1H5F7] 0.02 Orthogroups_2024-Update
At5g59910 No alias Histone H2B [Source:UniProtKB/TrEMBL;Acc:Q1H5F2] 0.04 Orthogroups_2024-Update
Brara.B01057.1 No alias histone *(H2B) 0.05 Orthogroups_2024-Update
Brara.D00516.1 No alias histone *(H2B) 0.02 Orthogroups_2024-Update
Brara.F01827.1 No alias histone *(H2B) 0.08 Orthogroups_2024-Update
Brara.I03652.1 No alias histone *(H2B) 0.03 Orthogroups_2024-Update
Brara.J01359.1 No alias histone *(H2B) 0.03 Orthogroups_2024-Update
Brara.J01445.1 No alias histone *(H2B) 0.05 Orthogroups_2024-Update
Cre06.g264800 No alias Histone superfamily protein 0.05 Orthogroups_2024-Update
Cre06.g264900 No alias Histone superfamily protein 0.04 Orthogroups_2024-Update
Cre06.g266750 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Cre06.g268250 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
Cre06.g273850 No alias Histone superfamily protein 0.04 Orthogroups_2024-Update
Cre06.g274250 No alias Histone superfamily protein 0.05 Orthogroups_2024-Update
Cre06.g274750 No alias Histone superfamily protein 0.05 Orthogroups_2024-Update
Cre06.g276550 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
Cre06.g276900 No alias Histone superfamily protein 0.04 Orthogroups_2024-Update
Cre12.g504550 No alias Histone superfamily protein 0.04 Orthogroups_2024-Update
Cre12.g504700 No alias Histone superfamily protein 0.05 Orthogroups_2024-Update
Cre12.g505600 No alias Histone superfamily protein 0.04 Orthogroups_2024-Update
Cre12.g506200 No alias Histone superfamily protein 0.05 Orthogroups_2024-Update
Cre13.g570050 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Cre17.g708600 No alias Histone superfamily protein 0.05 Orthogroups_2024-Update
Cre17.g711750 No alias Histone superfamily protein 0.04 Orthogroups_2024-Update
GRMZM2G046841 No alias Histone superfamily protein 0.05 Orthogroups_2024-Update
GRMZM2G141432 No alias Histone superfamily protein 0.04 Orthogroups_2024-Update
GRMZM2G305027 No alias Histone superfamily protein 0.05 Orthogroups_2024-Update
GRMZM2G306258 No alias Histone superfamily protein 0.06 Orthogroups_2024-Update
GRMZM2G401147 No alias Histone superfamily protein 0.05 Orthogroups_2024-Update
GRMZM2G472696 No alias Histone superfamily protein 0.04 Orthogroups_2024-Update
Glyma.10G198500 No alias Histone superfamily protein 0.04 Orthogroups_2024-Update
Glyma.11G141600 No alias Histone superfamily protein 0.05 Orthogroups_2024-Update
Glyma.11G141800 No alias Histone superfamily protein 0.05 Orthogroups_2024-Update
Glyma.11G142100 No alias Histone superfamily protein 0.04 Orthogroups_2024-Update
Glyma.12G065100 No alias Histone superfamily protein 0.06 Orthogroups_2024-Update
Glyma.12G065200 No alias Histone superfamily protein 0.04 Orthogroups_2024-Update
Glyma.12G065400 No alias Histone superfamily protein 0.07 Orthogroups_2024-Update
Glyma.13G132100 No alias Histone superfamily protein 0.04 Orthogroups_2024-Update
Glyma.19G173400 No alias Histone superfamily protein 0.06 Orthogroups_2024-Update
Glyma.20G191600 No alias Histone superfamily protein 0.04 Orthogroups_2024-Update
HORVU1Hr1G056530.1 No alias histone *(H2B) 0.03 Orthogroups_2024-Update
HORVU1Hr1G058440.4 No alias histone *(H2B) 0.05 Orthogroups_2024-Update
HORVU1Hr1G078480.6 No alias histone *(H2B) 0.03 Orthogroups_2024-Update
HORVU1Hr1G085540.1 No alias histone *(H2B) 0.03 Orthogroups_2024-Update
HORVU3Hr1G013530.1 No alias histone *(H2B) 0.04 Orthogroups_2024-Update
HORVU3Hr1G013680.1 No alias histone *(H2B) 0.02 Orthogroups_2024-Update
HORVU3Hr1G086610.4 No alias histone *(H2B) 0.03 Orthogroups_2024-Update
HORVU4Hr1G009040.2 No alias histone *(H2B) 0.03 Orthogroups_2024-Update
HORVU5Hr1G094500.1 No alias histone *(H2B) 0.02 Orthogroups_2024-Update
HORVU7Hr1G110310.1 No alias histone *(H2B) 0.03 Orthogroups_2024-Update
Kfl01110_0020 kfl01110_0020_v1.... (p16868|h2b4_volca : 167.0) Histone H2B.4 (H2B-IV) -... 0.03 Orthogroups_2024-Update
LOC_Os08g38300 No alias Core histone H2A/H2B/H3/H4 domain containing protein,... 0.02 Orthogroups_2024-Update
MA_10428006g0010 No alias (at3g45980 : 145.0) Encodes a histone 2B (H2B) protein.... 0.02 Orthogroups_2024-Update
MA_17795g0010 No alias (o22582|h2b_goshi : 174.0) Histone H2B - Gossypium... 0.03 Orthogroups_2024-Update
MA_77198g0010 No alias (at3g45980 : 157.0) Encodes a histone 2B (H2B) protein.... 0.04 Orthogroups_2024-Update
MA_9293473g0010 No alias (at5g22880 : 173.0) Encodes a histone 2B (H2B) protein.... 0.03 Orthogroups_2024-Update
PSME_00000376-RA No alias (p54347|h2b4_chlre : 153.0) Histone H2B.4 (H2B-IV) -... 0.04 Orthogroups_2024-Update
PSME_00025825-RA No alias (at5g22880 : 173.0) Encodes a histone 2B (H2B) protein.... 0.03 Orthogroups_2024-Update
Potri.008G029900 No alias Histone superfamily protein 0.05 Orthogroups_2024-Update
Pp1s117_2V6 No alias histone h2b 0.02 Orthogroups_2024-Update
Pp1s56_226V6 No alias histone h2b 0.02 Orthogroups_2024-Update
Sobic.003G200501.1 No alias histone *(H2B) 0.04 Orthogroups_2024-Update
Sobic.004G265400.1 No alias histone *(H2B) 0.05 Orthogroups_2024-Update
Sobic.007G149600.1 No alias histone *(H2B) 0.02 Orthogroups_2024-Update
Solyc02g038690 No alias Histone H2B (AHRD V3.3 *** K4B5W3_SOLLC) 0.05 Orthogroups_2024-Update
Solyc03g071620 No alias Histone H2B (AHRD V3.3 *** K4BHJ2_SOLLC) 0.08 Orthogroups_2024-Update
Solyc05g055440 No alias Histone H2B (AHRD V3.3 *** K4C2M0_SOLLC) 0.07 Orthogroups_2024-Update
Solyc06g005390 No alias Histone H2B (AHRD V3.3 *** K4C323_SOLLC) 0.05 Orthogroups_2024-Update
Solyc06g074780 No alias Histone H2B (AHRD V3.3 *** K4C9J5_SOLLC) 0.05 Orthogroups_2024-Update
Solyc06g074790 No alias Histone H2B (AHRD V3.3 *** M1AAN4_SOLTU) 0.05 Orthogroups_2024-Update
Solyc06g075800 No alias Histone H2B (AHRD V3.3 *** K4C9U5_SOLLC) 0.04 Orthogroups_2024-Update
Solyc11g007920 No alias Histone H2B (AHRD V3.3 *** K4D553_SOLLC) 0.05 Orthogroups_2024-Update
Solyc11g007930 No alias Histone H2B (AHRD V3.3 *** K4D554_SOLLC) 0.04 Orthogroups_2024-Update
Solyc11g066430 No alias histone H2B 0.04 Orthogroups_2024-Update
Sopen11g003800 No alias Core histone H2A/H2B/H3/H4 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA InterProScan predictions
MF GO:0003677 DNA binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 4 115
No external refs found!