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  5. Potri.005G219800

Potri.005G219800


Description : winged-helix DNA-binding transcription factor family protein


Gene families : OG_42_0000689 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000689_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Populus release: Potri.005G219800
Cluster HCCA clusters: cluster_0091

Target Alias Description ECC score Gene Family Method Actions
Bradi1g55260 No alias winged-helix DNA-binding transcription factor family protein 0.03 Orthogroups_2024-Update
Bradi5g19000 No alias histone H1-3 0.03 Orthogroups_2024-Update
Brara.J00464.1 No alias linker histone *(H1) 0.03 Orthogroups_2024-Update
GRMZM2G121221 No alias winged-helix DNA-binding transcription factor family protein 0.03 Orthogroups_2024-Update
GRMZM2G401308 No alias winged-helix DNA-binding transcription factor family protein 0.02 Orthogroups_2024-Update
HORVU2Hr1G094390.5 No alias linker histone *(H1) 0.02 Orthogroups_2024-Update
HORVU2Hr1G094400.5 No alias linker histone *(H1) 0.03 Orthogroups_2024-Update
HORVU5Hr1G106550.2 No alias linker histone *(H1) 0.04 Orthogroups_2024-Update
HORVU5Hr1G106730.2 No alias linker histone *(H1) 0.04 Orthogroups_2024-Update
Kfl00023_0480 kfl00023_0480_v1.1 (p23444|h1_maize : 87.4) Histone H1 - Zea mays (Maize) &... 0.02 Orthogroups_2024-Update
MA_196776g0010 No alias (original description: no original description) 0.03 Orthogroups_2024-Update
MA_6409g0010 No alias (original description: no original description) 0.03 Orthogroups_2024-Update
Sopen09g032300 No alias linker histone H1 and H5 family 0.03 Orthogroups_2024-Update
evm.model.contig_2062.24 No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA InterProScan predictions
MF GO:0003677 DNA binding IEA InterProScan predictions
CC GO:0005634 nucleus IEA InterProScan predictions
BP GO:0006334 nucleosome assembly IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR005818 Histone_H1/H5_H15 58 124
No external refs found!