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  5. Sopen12g007160

Sopen12g007160


Description : WD domain, G-beta repeat


Gene families : OG_42_0000717 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000717_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen12g007160
Cluster HCCA clusters: Cluster_179

Target Alias Description ECC score Gene Family Method Actions
A4A49_35805 No alias e3 ubiquitin-protein ligase cop1 0.02 Orthogroups_2024-Update
At1g53090 No alias SPA4 [Source:UniProtKB/TrEMBL;Acc:A0A178WBA0] 0.02 Orthogroups_2024-Update
At4g11110 No alias Protein SPA1-RELATED 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9T014] 0.02 Orthogroups_2024-Update
Bradi2g48657 No alias SPA1-related 4 0.03 Orthogroups_2024-Update
Brara.D01997.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Brara.E02608.1 No alias regulatory component *(SPA) of COP1-SPA light signal... 0.02 Orthogroups_2024-Update
HORVU1Hr1G090080.2 No alias regulatory component *(SPA) of COP1-SPA light signal... 0.02 Orthogroups_2024-Update
HORVU3Hr1G068840.7 No alias component *(SPA) of substrate adaptor module of... 0.03 Orthogroups_2024-Update
Pp1s37_28V6 No alias ubiquitin ligase protein 0.05 Orthogroups_2024-Update
Sobic.004G312600.1 No alias component *(COP1) of COP1-SPA light signal transduction... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001680 WD40_repeat 637 673
IPR001680 WD40_repeat 722 757
No external refs found!