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  5. Potri.006G001200

Potri.006G001200


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Populus release: Potri.006G001200
Cluster HCCA clusters: cluster_0186

Target Alias Description ECC score Gene Family Method Actions
82255 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
A4A49_07003 No alias pentatricopeptide repeat-containing protein 0.03 Orthogroups_2024-Update
A4A49_13653 No alias pentatricopeptide repeat-containing protein 0.04 Orthogroups_2024-Update
A4A49_18851 No alias pentatricopeptide repeat-containing protein 0.03 Orthogroups_2024-Update
A4A49_25971 No alias pentatricopeptide repeat-containing protein 0.04 Orthogroups_2024-Update
A4A49_26813 No alias putative pentatricopeptide repeat-containing protein,... 0.03 Orthogroups_2024-Update
At3g20730 No alias Pentatricopeptide repeat-containing protein At3g20730... 0.03 Orthogroups_2024-Update
At3g49170 No alias Pentatricopeptide repeat-containing protein At3g49170,... 0.04 Orthogroups_2024-Update
At4g37380 No alias Pentatricopeptide repeat-containing protein ELI1,... 0.03 Orthogroups_2024-Update
Bradi2g37360 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Bradi3g57730 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Brara.A02436.1 No alias RNA editing factor *(CRR2) 0.03 Orthogroups_2024-Update
Brara.E02827.1 No alias RNA editing factor *(MEF22) 0.04 Orthogroups_2024-Update
Brara.K00527.1 No alias RNA editing factor *(MEF29) 0.04 Orthogroups_2024-Update
GRMZM2G154743 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G481373 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
Glyma.03G264700 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.08G172502 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
HORVU0Hr1G001760.1 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU3Hr1G061610.1 No alias Unknown function 0.02 Orthogroups_2024-Update
HORVU3Hr1G080810.1 No alias RNA editing factor *(MEF10) 0.04 Orthogroups_2024-Update
HORVU3Hr1G092840.1 No alias Unknown function 0.04 Orthogroups_2024-Update
HORVU4Hr1G021240.1 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU5Hr1G079090.7 No alias Unknown function 0.04 Orthogroups_2024-Update
LOC_Os04g41120 No alias pentatricopeptide, putative, expressed 0.04 Orthogroups_2024-Update
LOC_Os07g07620 No alias pentatricopeptide, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os09g39970 No alias expressed protein 0.02 Orthogroups_2024-Update
LOC_Os12g01850 No alias pentatricopeptide, putative, expressed 0.04 Orthogroups_2024-Update
MA_168311g0010 No alias (at4g02750 : 377.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
MA_19146g0010 No alias (at3g12770 : 624.0) Encodes a pentatricopeptide repeat... 0.04 Orthogroups_2024-Update
MA_41676g0020 No alias (at3g24000 : 462.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
PSME_00005244-RA No alias (at3g46790 : 286.0) Encodes a member of a PCMP (plant... 0.02 Orthogroups_2024-Update
PSME_00005903-RA No alias (at2g22070 : 612.0) pentatricopeptide (PPR)... 0.02 Orthogroups_2024-Update
PSME_00013280-RA No alias (at4g33170 : 410.0) Tetratricopeptide repeat (TPR)-like... 0.02 Orthogroups_2024-Update
PSME_00018595-RA No alias (at1g11290 : 678.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update
PSME_00025402-RA No alias (at3g02010 : 629.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
PSME_00034005-RA No alias (at3g23330 : 585.0) Tetratricopeptide repeat (TPR)-like... 0.02 Orthogroups_2024-Update
PSME_00042876-RA No alias (at3g23330 : 160.0) Tetratricopeptide repeat (TPR)-like... 0.02 Orthogroups_2024-Update
PSME_00051747-RA No alias (at1g11290 : 641.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update
PSME_00052756-RA No alias (at3g09040 : 614.0) Pentatricopeptide repeat (PPR)... 0.02 Orthogroups_2024-Update
PSME_00057248-RA No alias (at1g11290 : 733.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update
Potri.002G237100 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 Orthogroups_2024-Update
Potri.015G034900 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Potri.017G001000 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Seita.4G168200.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.003G380100.2 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.004G174800.2 No alias Unknown function 0.03 Orthogroups_2024-Update
Solyc02g093380 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.04 Orthogroups_2024-Update
Solyc03g114660 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Solyc11g064750 No alias Pentatricopeptide repeat-containing family protein (AHRD... 0.03 Orthogroups_2024-Update
Sopen05g007940 No alias PPR repeat family 0.03 Orthogroups_2024-Update
Sopen11g024580 No alias PPR repeat family 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 80 125
IPR002885 Pentatricopeptide_repeat 182 230
IPR002885 Pentatricopeptide_repeat 284 331
IPR002885 Pentatricopeptide_repeat 430 452
IPR002885 Pentatricopeptide_repeat 357 381
IPR032867 DYW_dom 456 579
No external refs found!