Sopen12g007690


Description : RNA polymerase Rpb3/RpoA insert domain


Gene families : OG_42_0005297 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005297_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen12g007690
Cluster HCCA clusters: Cluster_29

Target Alias Description ECC score Gene Family Method Actions
At1g60620 No alias RNA polymerase I subunit 43 [Source:UniProtKB/TrEMBL;Acc:Q39216] 0.03 Orthogroups_2024-Update
At1g60850 No alias DNA-directed RNA polymerase family protein... 0.06 Orthogroups_2024-Update
Bradi1g15810 No alias RNA polymerase I subunit 43 0.04 Orthogroups_2024-Update
Cre07.g313302 No alias RNA polymerase I subunit 43 0.07 Orthogroups_2024-Update
Glyma.18G075300 No alias RNA polymerase I subunit 43 0.09 Orthogroups_2024-Update
HORVU1Hr1G057510.1 No alias component *(NRPA3) of RNA polymerase I complex &... 0.1 Orthogroups_2024-Update
Potri.001G369500 No alias RNA polymerase I subunit 43 0.06 Orthogroups_2024-Update
Seita.2G114800.1 No alias component *(NRPA3) of RNA polymerase I complex &... 0.12 Orthogroups_2024-Update
Sobic.004G077800.2 No alias component *(NRPA3) of RNA polymerase I complex &... 0.05 Orthogroups_2024-Update
Solyc12g015780 No alias DNA-directed RNA polymerase family protein (AHRD V3.3... 0.1 Orthogroups_2024-Update
evm.model.tig00020848.19 No alias (at1g60620 : 348.0) RNA polymerase I subunit 43... 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA InterProScan predictions
BP GO:0006351 transcription, DNA-templated IEA InterProScan predictions
MF GO:0046983 protein dimerization activity IEA InterProScan predictions
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR011262 DNA-dir_RNA_pol_insert 129 277
IPR011263 DNA-dir_RNA_pol_RpoA/D/Rpb3 99 385
No external refs found!