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  5. Sopen12g008680

Sopen12g008680


Description : rRNA-processing arch domain


Gene families : OG_42_0001297 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001297_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen12g008680
Cluster HCCA clusters: Cluster_260

Target Alias Description ECC score Gene Family Method Actions
At3g46960 No alias DExH-box ATP-dependent RNA helicase DExH11... 0.03 Orthogroups_2024-Update
Brara.E03073.1 No alias RNA helicase component *(HEN2) of Nuclear Exosome... 0.03 Orthogroups_2024-Update
Seita.1G080100.1 No alias RNA helicase component *(SKI2) of SUPERKILLER regulation complex 0.02 Orthogroups_2024-Update
Sobic.010G003400.1 No alias RNA helicase component *(MTR4) of TRAMP nucleolar... 0.02 Orthogroups_2024-Update
Solyc06g005990 No alias Helicase, putative (AHRD V3.3 *** B9S370_RICCO) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0005524 ATP binding IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 68 214
IPR025696 rRNA_proc-arch_dom 514 777
IPR001650 Helicase_C 371 458
IPR012961 Ski2_C 805 975
No external refs found!