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Description : Pentatricopeptide repeat (PPR) superfamily protein
Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Populus release: Potri.006G181800 | |
| Cluster | HCCA clusters: cluster_0005 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| A4A49_07003 | No alias | pentatricopeptide repeat-containing protein | 0.03 | Orthogroups_2024-Update | |
| A4A49_22283 | No alias | pentatricopeptide repeat-containing protein | 0.04 | Orthogroups_2024-Update | |
| A4A49_26813 | No alias | putative pentatricopeptide repeat-containing protein,... | 0.02 | Orthogroups_2024-Update | |
| A4A49_30034 | No alias | pentatricopeptide repeat-containing protein, chloroplastic | 0.02 | Orthogroups_2024-Update | |
| At4g30700 | No alias | MEF29 [Source:UniProtKB/TrEMBL;Acc:A0A178UUW3] | 0.03 | Orthogroups_2024-Update | |
| Brara.H02506.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| GRMZM2G084176 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
| HORVU1Hr1G063370.1 | No alias | RNA editing factor *(MEF32) | 0.03 | Orthogroups_2024-Update | |
| MA_653417g0010 | No alias | (at4g13650 : 731.0) Pentatricopeptide repeat (PPR)... | 0.03 | Orthogroups_2024-Update | |
| PSME_00001463-RA | No alias | (at4g33170 : 587.0) Tetratricopeptide repeat (TPR)-like... | 0.03 | Orthogroups_2024-Update | |
| PSME_00038079-RA | No alias | (at3g02010 : 593.0) Pentatricopeptide repeat (PPR)... | 0.02 | Orthogroups_2024-Update | |
| PSME_00056218-RA | No alias | (at1g11290 : 607.0) Pentatricopeptide Repeat Protein... | 0.03 | Orthogroups_2024-Update | |
| PSME_00056623-RA | No alias | (at2g03880 : 555.0) Pentatricopeptide repeat (PPR)... | 0.02 | Orthogroups_2024-Update | |
| Pp1s26_175V6 | No alias | T28P6.20; pentatricopeptide (PPR) repeat-containing... | 0.03 | Orthogroups_2024-Update | |
| Seita.2G247200.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Sobic.001G440300.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Solyc01g110010 | No alias | Pentatricopeptide repeat-containing protein (AHRD V3.3... | 0.03 | Orthogroups_2024-Update | |
| Solyc03g119120 | No alias | Pentatricopeptide repeat-containing protein (AHRD V3.3... | 0.03 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0008270 | zinc ion binding | IEA | InterProScan predictions |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002885 | Pentatricopeptide_repeat | 265 | 291 |
| IPR002885 | Pentatricopeptide_repeat | 293 | 322 |
| IPR002885 | Pentatricopeptide_repeat | 568 | 591 |
| IPR002885 | Pentatricopeptide_repeat | 90 | 115 |
| IPR002885 | Pentatricopeptide_repeat | 191 | 217 |
| IPR032867 | DYW_dom | 666 | 790 |
| IPR002885 | Pentatricopeptide_repeat | 492 | 539 |
| IPR002885 | Pentatricopeptide_repeat | 394 | 439 |
| No external refs found! |