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  5. Sopen12g009600

Sopen12g009600


Description : PPR repeat family


Gene families : OG_42_0009143 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0009143_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen12g009600
Cluster HCCA clusters: Cluster_115

Target Alias Description ECC score Gene Family Method Actions
Glyma.08G098100 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
Seita.1G120100.1 No alias component *(mL102) of large mitoribosomal-subunit proteome 0.03 Orthogroups_2024-Update
Sobic.004G007700.1 No alias component *(mL102) of large mitoribosomal-subunit proteome 0.03 Orthogroups_2024-Update
Solyc12g019290 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.07 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 189 235
IPR002885 Pentatricopeptide_repeat 258 305
IPR002885 Pentatricopeptide_repeat 404 431
IPR002885 Pentatricopeptide_repeat 480 508
IPR002885 Pentatricopeptide_repeat 372 395
IPR002885 Pentatricopeptide_repeat 446 474
IPR002885 Pentatricopeptide_repeat 517 543
IPR002885 Pentatricopeptide_repeat 158 186
IPR002885 Pentatricopeptide_repeat 325 357
No external refs found!