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  5. Potri.006G234400

Potri.006G234400


Description : RNApolymerase sigma-subunit C


Gene families : OG_42_0001174 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001174_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Populus release: Potri.006G234400
Cluster HCCA clusters: cluster_0035

Target Alias Description ECC score Gene Family Method Actions
Bradi2g14545 No alias RNApolymerase sigma-subunit C 0.02 Orthogroups_2024-Update
Glyma.10G057300 No alias RNApolymerase sigma-subunit F 0.03 Orthogroups_2024-Update
MA_10429585g0010 No alias (at1g08540 : 320.0) Enodes a subunit of chloroplast RNA... 0.04 Orthogroups_2024-Update
Seita.3G124300.1 No alias basal Sigma-type transcription factor 0.03 Orthogroups_2024-Update
Solyc01g081490 No alias Sigma factor (AHRD V3.3 *** A0A0G2STP3_9ROSI) 0.03 Orthogroups_2024-Update
Solyc09g008040 No alias Sigma factor (AHRD V3.3 *** A0A0G2STR6_9ROSI) 0.07 Orthogroups_2024-Update
Sopen01g033050 No alias Sigma-70, region 4 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEA InterProScan predictions
BP GO:0006352 DNA-templated transcription, initiation IEA InterProScan predictions
BP GO:0006355 regulation of transcription, DNA-templated IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR007630 RNA_pol_sigma70_r4 493 546
IPR007627 RNA_pol_sigma70_r2 325 394
IPR007624 RNA_pol_sigma70_r3 406 480
No external refs found!