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  5. Potri.006G244500

Potri.006G244500


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Populus release: Potri.006G244500
Cluster HCCA clusters: cluster_0067

Target Alias Description ECC score Gene Family Method Actions
82255 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.01 Orthogroups_2024-Update
A4A49_19306 No alias pentatricopeptide repeat-containing protein,... 0.04 Orthogroups_2024-Update
Glyma.07G127400 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
LOC_Os02g53050 No alias tetratricopeptide-like helical, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os04g43430 No alias pentatricopeptide, putative, expressed 0.02 Orthogroups_2024-Update
PSME_00001719-RA No alias (at4g18750 : 701.0) Encodes a pentatricopeptide (PPR)... 0.03 Orthogroups_2024-Update
PSME_00007181-RA No alias (at3g03580 : 567.0) Tetratricopeptide repeat (TPR)-like... 0.02 Orthogroups_2024-Update
PSME_00022685-RA No alias (at3g46790 : 552.0) Encodes a member of a PCMP (plant... 0.03 Orthogroups_2024-Update
Seita.1G102000.1 No alias Unknown function 0.01 Orthogroups_2024-Update
Seita.2G302700.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Seita.3G244400.1 No alias RNA editing factor *(MEF32) 0.01 Orthogroups_2024-Update
Seita.4G100100.1 No alias Unknown function 0.01 Orthogroups_2024-Update
Seita.4G168900.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.5G242100.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.5G385400.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Seita.6G130100.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.001G312700.1 No alias RNA editing factor *(MEF25) 0.02 Orthogroups_2024-Update
Sobic.003G277100.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.004G053100.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.006G146400.4 No alias RNA editing factor *(MEF12) 0.02 Orthogroups_2024-Update
Sobic.008G147400.2 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.009G136200.1 No alias RNA editing factor *(MEF32) 0.02 Orthogroups_2024-Update
Solyc01g081290 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Solyc01g091610 No alias LOW QUALITY:Pentatricopeptide repeat-containing protein... 0.03 Orthogroups_2024-Update
Solyc01g097670 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.04 Orthogroups_2024-Update
Solyc03g007840 No alias Pentatricopeptide repeat-containing protein, putative... 0.02 Orthogroups_2024-Update
Solyc05g023900 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Solyc09g009950 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.02 Orthogroups_2024-Update
Solyc11g011860 No alias Pentatricopeptide repeat-containing protein family (AHRD... 0.03 Orthogroups_2024-Update
Sopen03g028590 No alias PPR repeat family 0.02 Orthogroups_2024-Update
Sopen03g029160 No alias PPR repeat family 0.02 Orthogroups_2024-Update
Sopen09g027460 No alias PPR repeat 0.02 Orthogroups_2024-Update
Sopen10g030830 No alias PPR repeat 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 178 225
IPR002885 Pentatricopeptide_repeat 382 429
IPR002885 Pentatricopeptide_repeat 76 123
IPR002885 Pentatricopeptide_repeat 457 480
IPR002885 Pentatricopeptide_repeat 256 280
IPR002885 Pentatricopeptide_repeat 283 312
IPR032867 DYW_dom 556 683
No external refs found!