Description : Tetratricopeptide repeat (TPR)-like superfamily protein
Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Populus release: Potri.006G244500 | |
Cluster | HCCA clusters: cluster_0067 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
82255 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.01 | Orthogroups_2024-Update | |
A4A49_19306 | No alias | pentatricopeptide repeat-containing protein,... | 0.04 | Orthogroups_2024-Update | |
Glyma.07G127400 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
LOC_Os02g53050 | No alias | tetratricopeptide-like helical, putative, expressed | 0.02 | Orthogroups_2024-Update | |
LOC_Os04g43430 | No alias | pentatricopeptide, putative, expressed | 0.02 | Orthogroups_2024-Update | |
PSME_00001719-RA | No alias | (at4g18750 : 701.0) Encodes a pentatricopeptide (PPR)... | 0.03 | Orthogroups_2024-Update | |
PSME_00007181-RA | No alias | (at3g03580 : 567.0) Tetratricopeptide repeat (TPR)-like... | 0.02 | Orthogroups_2024-Update | |
PSME_00022685-RA | No alias | (at3g46790 : 552.0) Encodes a member of a PCMP (plant... | 0.03 | Orthogroups_2024-Update | |
Seita.1G102000.1 | No alias | Unknown function | 0.01 | Orthogroups_2024-Update | |
Seita.2G302700.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
Seita.3G244400.1 | No alias | RNA editing factor *(MEF32) | 0.01 | Orthogroups_2024-Update | |
Seita.4G100100.1 | No alias | Unknown function | 0.01 | Orthogroups_2024-Update | |
Seita.4G168900.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Seita.5G242100.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Seita.5G385400.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
Seita.6G130100.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Sobic.001G312700.1 | No alias | RNA editing factor *(MEF25) | 0.02 | Orthogroups_2024-Update | |
Sobic.003G277100.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Sobic.004G053100.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
Sobic.006G146400.4 | No alias | RNA editing factor *(MEF12) | 0.02 | Orthogroups_2024-Update | |
Sobic.008G147400.2 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
Sobic.009G136200.1 | No alias | RNA editing factor *(MEF32) | 0.02 | Orthogroups_2024-Update | |
Solyc01g081290 | No alias | Pentatricopeptide repeat-containing protein (AHRD V3.3... | 0.03 | Orthogroups_2024-Update | |
Solyc01g091610 | No alias | LOW QUALITY:Pentatricopeptide repeat-containing protein... | 0.03 | Orthogroups_2024-Update | |
Solyc01g097670 | No alias | Pentatricopeptide repeat-containing protein (AHRD V3.3... | 0.04 | Orthogroups_2024-Update | |
Solyc03g007840 | No alias | Pentatricopeptide repeat-containing protein, putative... | 0.02 | Orthogroups_2024-Update | |
Solyc05g023900 | No alias | Pentatricopeptide repeat-containing protein (AHRD V3.3... | 0.03 | Orthogroups_2024-Update | |
Solyc09g009950 | No alias | Pentatricopeptide repeat-containing protein (AHRD V3.3... | 0.02 | Orthogroups_2024-Update | |
Solyc11g011860 | No alias | Pentatricopeptide repeat-containing protein family (AHRD... | 0.03 | Orthogroups_2024-Update | |
Sopen03g028590 | No alias | PPR repeat family | 0.02 | Orthogroups_2024-Update | |
Sopen03g029160 | No alias | PPR repeat family | 0.02 | Orthogroups_2024-Update | |
Sopen09g027460 | No alias | PPR repeat | 0.02 | Orthogroups_2024-Update | |
Sopen10g030830 | No alias | PPR repeat | 0.02 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0008270 | zinc ion binding | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No Predicted GO terms available for this sequence |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR002885 | Pentatricopeptide_repeat | 178 | 225 |
IPR002885 | Pentatricopeptide_repeat | 382 | 429 |
IPR002885 | Pentatricopeptide_repeat | 76 | 123 |
IPR002885 | Pentatricopeptide_repeat | 457 | 480 |
IPR002885 | Pentatricopeptide_repeat | 256 | 280 |
IPR002885 | Pentatricopeptide_repeat | 283 | 312 |
IPR032867 | DYW_dom | 556 | 683 |
No external refs found! |