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  5. Sopen12g009950

Sopen12g009950


Description : ABC-2 type transporter


Gene families : OG_42_0000055 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000055_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen12g009950
Cluster HCCA clusters: Cluster_157

Target Alias Description ECC score Gene Family Method Actions
Glyma.17G039200 No alias pleiotropic drug resistance 9 0.03 Orthogroups_2024-Update
HORVU5Hr1G049450.2 No alias subfamily ABCG transporter 0.02 Orthogroups_2024-Update
LOC_Os09g16458 No alias pleiotropic drug resistance protein 4, putative, expressed 0.02 Orthogroups_2024-Update
Seita.5G221700.1 No alias subfamily ABCG transporter 0.03 Orthogroups_2024-Update
Sopen05g032120 No alias ABC-2 type transporter 0.03 Orthogroups_2024-Update
evm.model.tig00000057.108 No alias (at3g16340 : 255.0) pleiotropic drug resistance 1... 0.03 Orthogroups_2024-Update
evm.model.tig00020902.2 No alias (at3g16340 : 221.0) pleiotropic drug resistance 1... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA InterProScan predictions
CC GO:0016020 membrane IEA InterProScan predictions
MF GO:0016887 ATPase activity IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR029481 ABC_trans_N 58 120
IPR013525 ABC_2_trans 1141 1354
IPR013525 ABC_2_trans 481 693
IPR003439 ABC_transporter-like 145 327
IPR013581 PDR_assoc 698 760
IPR003439 ABC_transporter-like 843 995
No external refs found!