1. Home
  2. Species
  3. Populus trichocarpa
  4. Sequence
  5. Potri.006G262200

Potri.006G262200


Description : chromatin remodeling factor CHD3 (PICKLE)


Gene families : OG_42_0000148 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000148_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Populus release: Potri.006G262200
Cluster HCCA clusters: cluster_0064

Target Alias Description ECC score Gene Family Method Actions
Solyc02g068560 No alias CHD3-type chromatin-remodeling factor PICKLE (AHRD V3.3... 0.03 Orthogroups_2024-Update
Sopen06g024260 No alias SNF2 family N-terminal domain 0.02 Orthogroups_2024-Update
evm.model.tig00000217.24 No alias (at2g28290 : 140.0) Encodes a SWI2/SNF2-like protein in... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR023780 Chromo_domain 192 240
IPR023780 Chromo_domain 120 155
IPR009463 DUF1087 841 905
IPR009462 DUF1086 937 1070
IPR019787 Znf_PHD-finger 53 95
IPR001650 Helicase_C 606 719
IPR000330 SNF2_N 304 582
No external refs found!