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Description : Tetratricopeptide repeat (TPR)-like superfamily protein
Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Populus release: Potri.007G068600 | |
| Cluster | HCCA clusters: cluster_0002 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| 92471 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Orthogroups_2024-Update | |
| At1g13410 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein... | 0.02 | Orthogroups_2024-Update | |
| At1g20230 | No alias | Pentatricopeptide repeat-containing protein At1g20230... | 0.02 | Orthogroups_2024-Update | |
| At3g02010 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.05 | Orthogroups_2024-Update | |
| At3g11460 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.03 | Orthogroups_2024-Update | |
| Bradi2g22840 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Brara.A03053.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Brara.G01483.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| GRMZM2G001466 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Glyma.02G201800 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
| Glyma.03G227900 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Glyma.04G057300 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Glyma.12G005600 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Glyma.12G118200 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Glyma.12G146900 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Glyma.16G209700 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Glyma.17G072100 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Glyma.20G112100 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
| HORVU1Hr1G073180.8 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| HORVU2Hr1G023100.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| HORVU2Hr1G063300.4 | No alias | RNA editing factor *(ELI1) | 0.02 | Orthogroups_2024-Update | |
| HORVU3Hr1G080630.6 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
| HORVU7Hr1G111860.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
| MA_59599g0010 | No alias | (at3g49170 : 646.0) embryo defective 2261 (EMB2261);... | 0.03 | Orthogroups_2024-Update | |
| MA_681272g0010 | No alias | (at3g46790 : 439.0) Encodes a member of a PCMP (plant... | 0.02 | Orthogroups_2024-Update | |
| MA_81436g0010 | No alias | (at4g21300 : 593.0) Tetratricopeptide repeat (TPR)-like... | 0.03 | Orthogroups_2024-Update | |
| PSME_00055422-RA | No alias | (at2g13600 : 420.0) Pentatricopeptide repeat (PPR)... | 0.02 | Orthogroups_2024-Update | |
| Potri.004G071800 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Seita.1G191400.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Seita.1G237400.1 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
| Seita.1G272500.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Seita.2G203900.1 | No alias | RNA editing factor *(OTP87) | 0.03 | Orthogroups_2024-Update | |
| Seita.2G247200.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Seita.7G164600.1 | No alias | RNA editing factor *(MEF12) | 0.02 | Orthogroups_2024-Update | |
| Sobic.001G001200.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Sobic.001G025800.1 | No alias | RNA editing factor *(CRR22) | 0.02 | Orthogroups_2024-Update | |
| Sobic.001G478900.2 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Sobic.002G200500.3 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
| Sobic.003G237100.2 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Sobic.003G337200.1 | No alias | RNA editing factor *(MEF10) | 0.03 | Orthogroups_2024-Update | |
| Sobic.004G199400.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Sobic.004G290400.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Sobic.006G146900.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
| Sobic.007G187600.1 | No alias | processivity component *(REV7) of DNA polymerase zeta complex | 0.03 | Orthogroups_2024-Update | |
| Sobic.010G190900.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Solyc04g064750 | No alias | Pentatricopeptide repeat superfamily protein (AHRD V3.3... | 0.03 | Orthogroups_2024-Update | |
| Solyc07g055310 | No alias | Pentatricopeptide repeat-containing protein (AHRD V3.3... | 0.03 | Orthogroups_2024-Update | |
| Sopen01g032600 | No alias | PPR repeat family | 0.02 | Orthogroups_2024-Update | |
| Sopen01g041280 | No alias | PPR repeat family | 0.03 | Orthogroups_2024-Update | |
| Sopen02g025050 | No alias | PPR repeat family | 0.03 | Orthogroups_2024-Update | |
| Sopen02g033370 | No alias | PPR repeat family | 0.03 | Orthogroups_2024-Update | |
| Sopen03g011150 | No alias | PPR repeat | 0.04 | Orthogroups_2024-Update | |
| Sopen03g029160 | No alias | PPR repeat family | 0.03 | Orthogroups_2024-Update | |
| Sopen03g034990 | No alias | PPR repeat family | 0.03 | Orthogroups_2024-Update | |
| Sopen03g038010 | No alias | PPR repeat | 0.03 | Orthogroups_2024-Update | |
| Sopen05g018650 | No alias | PPR repeat family | 0.03 | Orthogroups_2024-Update | |
| Sopen06g022100 | No alias | PPR repeat family | 0.03 | Orthogroups_2024-Update | |
| Sopen06g035950 | No alias | PPR repeat family | 0.03 | Orthogroups_2024-Update | |
| Sopen07g026910 | No alias | PPR repeat family | 0.02 | Orthogroups_2024-Update | |
| Sopen09g033130 | No alias | PPR repeat family | 0.02 | Orthogroups_2024-Update | |
| Sopen10g030830 | No alias | PPR repeat | 0.02 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0008270 | zinc ion binding | IEA | InterProScan predictions |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002885 | Pentatricopeptide_repeat | 207 | 233 |
| IPR002885 | Pentatricopeptide_repeat | 409 | 435 |
| IPR002885 | Pentatricopeptide_repeat | 816 | 838 |
| IPR002885 | Pentatricopeptide_repeat | 437 | 462 |
| IPR002885 | Pentatricopeptide_repeat | 308 | 333 |
| IPR002885 | Pentatricopeptide_repeat | 235 | 265 |
| IPR002885 | Pentatricopeptide_repeat | 510 | 535 |
| IPR002885 | Pentatricopeptide_repeat | 334 | 380 |
| IPR002885 | Pentatricopeptide_repeat | 637 | 678 |
| IPR002885 | Pentatricopeptide_repeat | 131 | 177 |
| IPR002885 | Pentatricopeptide_repeat | 536 | 582 |
| IPR002885 | Pentatricopeptide_repeat | 742 | 786 |
| IPR032867 | DYW_dom | 913 | 1035 |
| No external refs found! |