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  5. Sopen12g011100

Sopen12g011100


Description : Reverse transcriptase (RNA-dependent DNA polymerase)


Gene families : OG_42_0000004 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen12g011100
Cluster HCCA clusters: Cluster_24

Target Alias Description ECC score Gene Family Method Actions
Cre08.g358542 No alias Function unknown 0.01 Orthogroups_2024-Update
Mp2g03770.1 No alias no hits & (original description: none) 0.01 Orthogroups_2024-Update
Solyc08g044450 No alias No description available 0.02 Orthogroups_2024-Update
Solyc10g054430 No alias No description available 0.03 Orthogroups_2024-Update
Sopen01g012600 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen01g026660 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen02g004620 No alias Integrase core domain 0.03 Orthogroups_2024-Update
Sopen03g017250 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen04g009770 No alias Integrase core domain 0.02 Orthogroups_2024-Update
Sopen04g035310 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen05g016700 No alias Integrase core domain 0.03 Orthogroups_2024-Update
Sopen07g005780 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen08g007650 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen10g008020 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen10g011720 No alias Integrase core domain 0.03 Orthogroups_2024-Update
Sopen11g022280 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen12g011740 No alias Integrase core domain 0.02 Orthogroups_2024-Update
evm.model.contig_2498.1 No alias (p31843|rrpo_oenbe : 132.0) RNA-directed DNA polymerase... 0.01 Orthogroups_2024-Update
evm.model.contig_3758.2 No alias no hits & (original description: no original description) 0.01 Orthogroups_2024-Update
evm.model.tig00021758.17 No alias (p31843|rrpo_oenbe : 98.2) RNA-directed DNA polymerase... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000477 RT_dom 936 1095
IPR005162 Retrotrans_gag_dom 506 597
No external refs found!