1. Home
  2. Species
  3. Solanum pennellii
  4. Sequence
  5. Sopen12g011680

Sopen12g011680


Description : Reverse transcriptase (RNA-dependent DNA polymerase)


Gene families : OG_42_0000004 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen12g011680
Cluster HCCA clusters: Cluster_275

Target Alias Description ECC score Gene Family Method Actions
Cre08.g358542 No alias Function unknown 0.02 Orthogroups_2024-Update
Kfl00569_0100 kfl00569_0100_v1.1 (p31843|rrpo_oenbe : 135.0) RNA-directed DNA polymerase... 0.02 Orthogroups_2024-Update
LOC_Os04g51430 No alias retrotransposon protein, putative, unclassified, expressed 0.02 Orthogroups_2024-Update
LOC_Os06g07400 No alias retrotransposon protein, putative, unclassified, expressed 0.03 Orthogroups_2024-Update
Sopen00g005290 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen01g012600 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.04 Orthogroups_2024-Update
Sopen02g001860 No alias hypothetical protein 0.03 Orthogroups_2024-Update
Sopen02g012310 No alias Retroviral aspartyl protease 0.03 Orthogroups_2024-Update
Sopen02g028910 No alias Integrase core domain 0.03 Orthogroups_2024-Update
Sopen03g021300 No alias hypothetical protein 0.03 Orthogroups_2024-Update
Sopen04g009770 No alias Integrase core domain 0.03 Orthogroups_2024-Update
Sopen05g012930 No alias Integrase core domain 0.02 Orthogroups_2024-Update
Sopen06g016840 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen08g009610 No alias Integrase core domain 0.03 Orthogroups_2024-Update
Sopen10g005990 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen10g008640 No alias Retrotransposon gag protein 0.03 Orthogroups_2024-Update
Sopen11g019880 No alias Retroviral aspartyl protease 0.03 Orthogroups_2024-Update
Sopen12g018380 No alias Retrotransposon gag protein 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR005162 Retrotrans_gag_dom 232 325
IPR000477 RT_dom 729 887
No external refs found!