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  5. Sopen12g011740

Sopen12g011740


Description : Integrase core domain


Gene families : OG_42_0000004 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen12g011740
Cluster HCCA clusters: Cluster_27

Target Alias Description ECC score Gene Family Method Actions
Cre08.g358542 No alias Function unknown 0.04 Orthogroups_2024-Update
Kfl00590_0100 kfl00590_0100_v1.1 no hits & (original description: no original description) 0.02 Orthogroups_2024-Update
Solyc04g040100 No alias No description available 0.02 Orthogroups_2024-Update
Solyc08g043150 No alias No description available 0.02 Orthogroups_2024-Update
Sopen00g001810 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen01g011220 No alias Retroviral aspartyl protease 0.02 Orthogroups_2024-Update
Sopen01g012260 No alias Retroviral aspartyl protease 0.02 Orthogroups_2024-Update
Sopen01g012600 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen02g011110 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.04 Orthogroups_2024-Update
Sopen02g012310 No alias Retroviral aspartyl protease 0.07 Orthogroups_2024-Update
Sopen02g028910 No alias Integrase core domain 0.02 Orthogroups_2024-Update
Sopen04g009770 No alias Integrase core domain 0.11 Orthogroups_2024-Update
Sopen05g010930 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.04 Orthogroups_2024-Update
Sopen06g011960 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen07g004430 No alias gag-polypeptide of LTR copia-type 0.03 Orthogroups_2024-Update
Sopen10g005990 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen10g015090 No alias Integrase core domain 0.03 Orthogroups_2024-Update
Sopen10g021770 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.04 Orthogroups_2024-Update
Sopen10g028470 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen11g009960 No alias Retrotransposon gag protein 0.03 Orthogroups_2024-Update
Sopen11g013220 No alias Retrotransposon gag protein 0.02 Orthogroups_2024-Update
Sopen11g023740 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.04 Orthogroups_2024-Update
Sopen12g011100 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0015074 DNA integration IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000477 RT_dom 505 629
IPR001584 Integrase_cat-core 1005 1113
No external refs found!