Sopen12g011860

Description : Retroviral aspartyl protease

Gene families : OG_42_0000004 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen12g011860
Cluster	HCCA clusters: Cluster_9

Target	Alias	Description	ECC score	Gene Family Method
Cre08.g358542	No alias	Function unknown	0.02	Orthogroups_2024-Update
Solyc08g043150	No alias	No description available	0.04	Orthogroups_2024-Update
Solyc08g044450	No alias	No description available	0.02	Orthogroups_2024-Update
Sopen01g012260	No alias	Retroviral aspartyl protease	0.04	Orthogroups_2024-Update
Sopen01g012600	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.03	Orthogroups_2024-Update
Sopen04g019550	No alias	hypothetical protein	0.03	Orthogroups_2024-Update
Sopen05g016320	No alias	Integrase core domain	0.02	Orthogroups_2024-Update
Sopen05g023200	No alias	Retroviral aspartyl protease	0.03	Orthogroups_2024-Update
Sopen06g011960	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.03	Orthogroups_2024-Update
Sopen07g021480	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.02	Orthogroups_2024-Update
Sopen08g007650	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.03	Orthogroups_2024-Update
Sopen11g008450	No alias	Integrase core domain	0.03	Orthogroups_2024-Update
Sopen11g025830	No alias	Retroviral aspartyl protease	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
No GO annotation available for this sequence

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR000477	RT_dom	761	911
IPR005162	Retrotrans_gag_dom	209	305

External Links

No external refs found!