1. Home
  2. Species
  3. Populus trichocarpa
  4. Sequence
  5. Potri.008G031500

Potri.008G031500


Description : AMP-dependent synthetase and ligase family protein


Gene families : OG_42_0000133 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000133_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Populus release: Potri.008G031500
Cluster HCCA clusters: cluster_0141

Target Alias Description ECC score Gene Family Method Actions
Bradi3g52350 No alias 4-coumarate:CoA ligase 3 0.03 Orthogroups_2024-Update
Brara.G01098.1 No alias OPC-8 0.03 Orthogroups_2024-Update
Glyma.15G001700 No alias 4-coumarate:CoA ligase 2 0.03 Orthogroups_2024-Update
HORVU0Hr1G002720.3 No alias Unknown function 0.02 Orthogroups_2024-Update
MA_10432138g0010 No alias (at1g20510 : 477.0) OPC-8:0 CoA ligase1 (OPCL1);... 0.03 Orthogroups_2024-Update
PSME_00010613-RA No alias (at1g20510 : 572.0) OPC-8:0 CoA ligase1 (OPCL1);... 0.04 Orthogroups_2024-Update
Seita.6G093400.1 No alias p-coumarate 0.02 Orthogroups_2024-Update
Sobic.004G062500.1 No alias p-coumarate 0.03 Orthogroups_2024-Update
Sopen03g030320 No alias AMP-binding enzyme 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000873 AMP-dep_Synth/Lig 56 453
IPR025110 AMP-bd_C 463 538
No external refs found!