- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Description : Pentatricopeptide repeat (PPR) superfamily protein
Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Populus release: Potri.008G052200 | |
| Cluster | HCCA clusters: cluster_0173 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| 103939 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Orthogroups_2024-Update | |
| A4A49_07003 | No alias | pentatricopeptide repeat-containing protein | 0.03 | Orthogroups_2024-Update | |
| AC196637.2_FG002 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Orthogroups_2024-Update | |
| At2g41080 | No alias | Pentatricopeptide repeat-containing protein At2g41080... | 0.03 | Orthogroups_2024-Update | |
| At5g13270 | No alias | Pentatricopeptide repeat-containing protein At5g13270,... | 0.03 | Orthogroups_2024-Update | |
| Bradi3g57730 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
| Brara.F01240.1 | No alias | RNA editing factor *(CWM1) | 0.03 | Orthogroups_2024-Update | |
| GRMZM2G030148 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
| Glyma.07G068600 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.04 | Orthogroups_2024-Update | |
| HORVU2Hr1G063300.4 | No alias | RNA editing factor *(ELI1) | 0.02 | Orthogroups_2024-Update | |
| HORVU3Hr1G061600.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| HORVU5Hr1G040610.4 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| PSME_00056623-RA | No alias | (at2g03880 : 555.0) Pentatricopeptide repeat (PPR)... | 0.02 | Orthogroups_2024-Update | |
| Potri.016G053500 | No alias | mitochondrial RNAediting factor 1 | 0.03 | Orthogroups_2024-Update | |
| Pp1s169_110V6 | No alias | T12J13.14; pentatricopeptide (PPR) repeat-containing... | 0.02 | Orthogroups_2024-Update | |
| Seita.9G213100.1 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
| Seita.9G548100.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Solyc03g119950 | No alias | Pentatricopeptide repeat-containing family protein (AHRD... | 0.03 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002885 | Pentatricopeptide_repeat | 606 | 653 |
| IPR002885 | Pentatricopeptide_repeat | 102 | 149 |
| IPR002885 | Pentatricopeptide_repeat | 707 | 754 |
| IPR002885 | Pentatricopeptide_repeat | 507 | 533 |
| IPR002885 | Pentatricopeptide_repeat | 479 | 505 |
| IPR002885 | Pentatricopeptide_repeat | 206 | 236 |
| IPR002885 | Pentatricopeptide_repeat | 783 | 807 |
| IPR002885 | Pentatricopeptide_repeat | 277 | 302 |
| IPR002885 | Pentatricopeptide_repeat | 580 | 601 |
| IPR002885 | Pentatricopeptide_repeat | 305 | 330 |
| IPR002885 | Pentatricopeptide_repeat | 406 | 436 |
| IPR002885 | Pentatricopeptide_repeat | 168 | 201 |
| No external refs found! |