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  5. Solyc03g005380

Solyc03g005380


Description : Protein transport protein sec23, putative (AHRD V3.3 *** B9RTF3_RICCO)


Gene families : OG_42_0001214 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001214_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc03g005380
Cluster HCCA clusters: Cluster_255

Target Alias Description ECC score Gene Family Method Actions
Solyc09g092680 No alias Protein transport protein sec23, putative (AHRD V3.3 ***... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0006886 intracellular protein transport IEA InterProScan predictions
BP GO:0006888 ER to Golgi vesicle-mediated transport IEA InterProScan predictions
MF GO:0008270 zinc ion binding IEA InterProScan predictions
CC GO:0030127 COPII vesicle coat IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP Predicted GO
MF GO:0004435 phosphatidylinositol phospholipase C activity IEP Predicted GO
MF GO:0004620 phospholipase activity IEP Predicted GO
MF GO:0004629 phospholipase C activity IEP Predicted GO
BP GO:0006338 chromatin remodeling IEP Predicted GO
BP GO:0006629 lipid metabolic process IEP Predicted GO
BP GO:0007049 cell cycle IEP Predicted GO
MF GO:0008081 phosphoric diester hydrolase activity IEP Predicted GO
BP GO:0009892 negative regulation of metabolic process IEP Predicted GO
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0010629 negative regulation of gene expression IEP Predicted GO
MF GO:0016298 lipase activity IEP Predicted GO
BP GO:0016458 gene silencing IEP Predicted GO
MF GO:0016717 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water IEP Predicted GO
BP GO:0031047 gene silencing by RNA IEP Predicted GO
MF GO:0031491 nucleosome binding IEP Predicted GO
BP GO:0043044 ATP-dependent chromatin remodeling IEP Predicted GO
MF GO:0044877 protein-containing complex binding IEP Predicted GO
MF GO:0045300 acyl-[acyl-carrier-protein] desaturase activity IEP Predicted GO
BP GO:0051321 meiotic cell cycle IEP Predicted GO
InterPro domains Description Start Stop
IPR006895 Znf_Sec23_Sec24 53 91
IPR006900 Sec23/24_helical_dom 536 634
IPR007123 Gelsolin-like_dom 650 736
IPR012990 Sec23_24_beta_S 424 524
IPR006896 Sec23/24_trunk_dom 157 407
No external refs found!