Potri.008G206200

Description : Pseudouridine synthase family protein

Gene families : OG_42_0007901 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0007901_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Populus release: Potri.008G206200
Cluster	HCCA clusters: cluster_0050

Target	Alias	Description	ECC score	Gene Family Method
Brara.C03186.1	No alias	TruA-type tRNA pseudouridine synthase & EC_5.4...	0.04	Orthogroups_2024-Update
Seita.1G156600.1	No alias	TruA-type tRNA pseudouridine synthase & EC_5.4...	0.03	Orthogroups_2024-Update
Sobic.004G193200.5	No alias	TruA-type tRNA pseudouridine synthase & EC_5.4...	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
BP	GO:0001522	pseudouridine synthesis	IEA	InterProScan predictions
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	InterProScan predictions
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009451	RNA modification	IEA	InterProScan predictions
MF	GO:0009982	pseudouridine synthase activity	IEA	InterProScan predictions
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016853	isomerase activity	None	Extended
MF	GO:0016866	intramolecular transferase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR020097	PsdUridine_synth_TruA_a/b_dom	64	162
IPR020097	PsdUridine_synth_TruA_a/b_dom	202	309

External Links

No external refs found!

Potri.008G206200

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation