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  5. Potri.008G211500

Potri.008G211500


Description : Pectin lyase-like superfamily protein


Gene families : OG_42_0000259 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000259_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Populus release: Potri.008G211500
Cluster HCCA clusters: cluster_0053

Target Alias Description ECC score Gene Family Method Actions
At3g48950 No alias Endo-polygalacturonase-like protein... 0.03 Orthogroups_2024-Update
Bradi1g52050 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Brara.A01388.1 No alias EC_3.2 glycosylase 0.02 Orthogroups_2024-Update
Brara.F01639.1 No alias EC_3.2 glycosylase 0.03 Orthogroups_2024-Update
Glyma.03G216800 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.19G221600 No alias Pectin lyase-like superfamily protein 0.02 Orthogroups_2024-Update
LOC_Os01g43160 No alias polygalacturonase, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os05g50960 No alias polygalacturonase, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os09g26800 No alias polygalacturonase, putative, expressed 0.02 Orthogroups_2024-Update
Pp1s16_66V6 No alias polygalacturonase 0.02 Orthogroups_2024-Update
Sobic.001G525000.1 No alias EC_3.2 glycosylase 0.02 Orthogroups_2024-Update
Sobic.002G214900.1 No alias EC_3.2 glycosylase 0.02 Orthogroups_2024-Update
Solyc09g075460 No alias Pectin lyase-like superfamily protein (AHRD V3.3 *** AT3G16850.1) 0.02 Orthogroups_2024-Update
Sopen05g028340 No alias Glycosyl hydrolases family 28 0.03 Orthogroups_2024-Update
Sopen08g029810 No alias Glycosyl hydrolases family 28 0.02 Orthogroups_2024-Update
Sopen08g030460 No alias Glycosyl hydrolases family 28 0.02 Orthogroups_2024-Update
Sopen09g030250 No alias Glycosyl hydrolases family 28 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEA InterProScan predictions
BP GO:0005975 carbohydrate metabolic process IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 136 416
No external refs found!