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  5. Potri.009G005900

Potri.009G005900


Description : DNA ligase 1


Gene families : OG_42_0002339 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002339_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Populus release: Potri.009G005900
Cluster HCCA clusters: cluster_0105

Target Alias Description ECC score Gene Family Method Actions
Bradi3g29530 No alias DNA ligase 1 0.03 Orthogroups_2024-Update
Brara.F00544.1 No alias DNA replication DNA ligase *(LIG1) & DNA ligase *(LIG1)... 0.03 Orthogroups_2024-Update
Cre06.g278177 No alias DNA LIGASE 6 0.01 Orthogroups_2024-Update
HORVU1Hr1G044350.16 No alias EC_6.5 ligase forming phosphoric ester bond 0.02 Orthogroups_2024-Update
Seita.9G212100.1 No alias DNA ligase *(LIG1) & DNA replication DNA ligase *(LIG1)... 0.03 Orthogroups_2024-Update
Sobic.003G260400.1 No alias DNA ligase *(LIG6) & EC_6.5 ligase forming phosphoric ester bond 0.03 Orthogroups_2024-Update
evm.model.tig00000754.31 No alias (at1g08130 : 306.0) Encodes the Arabidopsis DNA ligase 1... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan predictions
MF GO:0003910 DNA ligase (ATP) activity IEA InterProScan predictions
MF GO:0005524 ATP binding IEA InterProScan predictions
BP GO:0006281 DNA repair IEA InterProScan predictions
BP GO:0006310 DNA recombination IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR012308 DNA_ligase_ATP-dep_N 185 360
IPR012309 DNA_ligase_ATP-dep_C 656 767
IPR012310 DNA_ligase_ATP-dep_cent 427 631
No external refs found!