Potri.009G079900

Description : DNA polymerase V family

Gene families : OG_42_0004376 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004376_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Populus release: Potri.009G079900
Cluster	HCCA clusters: cluster_0106

Target	Alias	Description	ECC score	Gene Family Method
Bradi3g03140	No alias	DNA polymerase V family	0.02	Orthogroups_2024-Update
Brara.F02320.1	No alias	Unknown function	0.06	Orthogroups_2024-Update
Cre01.g012350	No alias	DNA polymerase V family	0.07	Orthogroups_2024-Update
GRMZM2G054765	No alias	DNA polymerase V family	0.02	Orthogroups_2024-Update
Glyma.15G060100	No alias	DNA polymerase V family	0.03	Orthogroups_2024-Update
Kfl00377_0020	kfl00377_0020_v1.1	(at5g64420 : 214.0) DNA polymerase V family; FUNCTIONS...	0.02	Orthogroups_2024-Update
Seita.1G094800.1	No alias	Unknown function	0.1	Orthogroups_2024-Update
Sobic.004G033300.1	No alias	Unknown function	0.08	Orthogroups_2024-Update
Sopen01g048630	No alias	DNA polymerase phi	0.05	Orthogroups_2024-Update
evm.model.contig_3385.21	No alias	(original description: no original description)	0.02	Orthogroups_2024-Update
evm.model.tig00021108.9	No alias	(at5g64420 : 89.4) DNA polymerase V family; FUNCTIONS...	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005730	nucleolus	IEA	InterProScan predictions
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	InterProScan predictions
MF	GO:0008134	transcription factor binding	IEA	InterProScan predictions
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
CC	GO:0044422	organelle part	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044428	nuclear part	None	Extended
CC	GO:0044446	intracellular organelle part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR007015	DNA_pol_V/MYBBP1A	194	1008

External Links

No external refs found!

Potri.009G079900

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation