Potri.009G170100

Description : FAR1-related sequence 5

Gene families : OG_42_0000075 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000075_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Populus release: Potri.009G170100
Cluster	HCCA clusters: cluster_0079

Target	Alias	Description	ECC score	Gene Family Method
Bradi1g06907	No alias	FAR1-related sequence 5	0.03	Orthogroups_2024-Update
Glyma.09G012900	No alias	FAR1-related sequence 10	0.03	Orthogroups_2024-Update
Glyma.14G000400	No alias	FAR1-related sequence 5	0.03	Orthogroups_2024-Update
Glyma.14G043900	No alias	FAR1-related sequence 3	0.03	Orthogroups_2024-Update
HORVU2Hr1G063550.3	No alias	FRS/FRF-type transcription factor	0.03	Orthogroups_2024-Update
LOC_Os01g71850	No alias	transposon protein, putative, unclassified, expressed	0.02	Orthogroups_2024-Update
LOC_Os12g32140	No alias	transposon protein, putative, unclassified, expressed	0.02	Orthogroups_2024-Update
Sobic.001G070600.1	No alias	FRS/FRF-type transcription factor	0.03	Orthogroups_2024-Update
Sopen03g040440	No alias	FAR1 DNA-binding domain	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0008270	zinc ion binding	IEA	InterProScan predictions
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR004330	FAR1_DNA_bnd_dom	77	168
IPR007527	Znf_SWIM	557	603
IPR018289	MULE_transposase_dom	289	381

External Links

No external refs found!