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  5. Potri.010G019800

Potri.010G019800


Description : chromatin-remodeling protein 11


Gene families : OG_42_0000148 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000148_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Populus release: Potri.010G019800
Cluster HCCA clusters: cluster_0016

Target Alias Description ECC score Gene Family Method Actions
164481 No alias P-loop containing nucleoside triphosphate hydrolases... 0.02 Orthogroups_2024-Update
440203 No alias chromatin-remodeling protein 11 0.02 Orthogroups_2024-Update
A4A49_03849 No alias protein chromatin remodeling 4 0.02 Orthogroups_2024-Update
Bradi2g36380 No alias Homeotic gene regulator 0.02 Orthogroups_2024-Update
Brara.C01994.1 No alias SMARCA component *(SYD/BRM/MINU) 0.03 Orthogroups_2024-Update
Cre12.g537671 No alias chromatin remodeling 4 0.02 Orthogroups_2024-Update
GRMZM2G049168 No alias SNF2 domain-containing protein / helicase... 0.03 Orthogroups_2024-Update
Sobic.003G163200.1 No alias ATPase component *(CHR11/CHR17) of ISWI chromatin... 0.03 Orthogroups_2024-Update
Solyc02g068560 No alias CHD3-type chromatin-remodeling factor PICKLE (AHRD V3.3... 0.03 Orthogroups_2024-Update
Sopen02g013810 No alias SNF2 family N-terminal domain 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0003677 DNA binding IEA InterProScan predictions
MF GO:0005524 ATP binding IEA InterProScan predictions
CC GO:0005634 nucleus IEA InterProScan predictions
BP GO:0006338 chromatin remodeling IEA InterProScan predictions
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEA InterProScan predictions
MF GO:0031491 nucleosome binding IEA InterProScan predictions
BP GO:0043044 ATP-dependent chromatin remodeling IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001650 Helicase_C 486 598
IPR000330 SNF2_N 196 463
IPR015194 ISWI_HAND-dom 747 830
IPR015195 SLIDE 891 1001
IPR020838 DBINO 78 130
No external refs found!