Potri.010G172500

Description : RNA helicase family protein

Gene families : OG_42_0000210 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000210_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Populus release: Potri.010G172500
Cluster	HCCA clusters: cluster_0005

Target	Alias	Description	ECC score	Gene Family Method
A4A49_00699	No alias	pre-mrna-splicing factor atp-dependent rna helicase deah7	0.02	Orthogroups_2024-Update
Bradi3g13460	No alias	ATP-dependent RNA helicase, putative	0.02	Orthogroups_2024-Update
Cre08.g358563	No alias	ATP-dependent RNA helicase, putative	0.02	Orthogroups_2024-Update
GRMZM2G029258	No alias	ATP-dependent RNA helicase, putative	0.03	Orthogroups_2024-Update
HORVU7Hr1G107830.1	No alias	Unknown function	0.03	Orthogroups_2024-Update
LOC_Os06g23530	No alias	pre-mRNA-splicing factor ATP-dependent RNA helicase,...	0.03	Orthogroups_2024-Update
MA_629782g0010	No alias	(at5g13010 : 617.0) embryo defective 3011 (EMB3011);...	0.03	Orthogroups_2024-Update
Pp1s268_11V6	No alias	deah (asp-glu-ala-his) box polypeptide 35	0.02	Orthogroups_2024-Update
Seita.2G326100.1	No alias	RNA helicase *(Prp16)	0.03	Orthogroups_2024-Update
Seita.4G042700.1	No alias	RNA helicase *(Prp22)	0.04	Orthogroups_2024-Update
Sobic.003G124600.1	No alias	RNA helicase *(Prp2)	0.03	Orthogroups_2024-Update
Sopen05g010270	No alias	Oligonucleotide/oligosaccharide-binding (OB)-fold	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	InterProScan predictions
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	InterProScan predictions
MF	GO:0008144	drug binding	None	Extended
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	nucleoside-triphosphatase activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR011709	DUF1605	1128	1205
IPR007502	Helicase-assoc_dom	984	1069
IPR011545	DEAD/DEAH_box_helicase_dom	592	745
IPR001650	Helicase_C	791	920

External Links

No external refs found!