Sopen12g018380

Description : Retrotransposon gag protein

Gene families : OG_42_0000004 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen12g018380
Cluster	HCCA clusters: Cluster_200

Target	Alias	Description	ECC score	Gene Family Method
Cre08.g358542	No alias	Function unknown	0.02	Orthogroups_2024-Update
HORVU0Hr1G011670.1	No alias	Unknown function	0.02	Orthogroups_2024-Update
Kfl00569_0100	kfl00569_0100_v1.1	(p31843\|rrpo_oenbe : 135.0) RNA-directed DNA polymerase...	0.02	Orthogroups_2024-Update
LOC_Os08g35020	No alias	retrotransposon protein, putative, unclassified, expressed	0.02	Orthogroups_2024-Update
LOC_Os10g42880	No alias	retrotransposon protein, putative, unclassified, expressed	0.02	Orthogroups_2024-Update
Potri.001G260400	No alias	Function unknown	0.03	Orthogroups_2024-Update
Solyc08g044450	No alias	No description available	0.02	Orthogroups_2024-Update
Solyc10g054430	No alias	No description available	0.03	Orthogroups_2024-Update
Sopen01g012600	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.03	Orthogroups_2024-Update
Sopen02g008030	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.03	Orthogroups_2024-Update
Sopen05g023200	No alias	Retroviral aspartyl protease	0.03	Orthogroups_2024-Update
Sopen08g014830	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.03	Orthogroups_2024-Update
Sopen10g028470	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.03	Orthogroups_2024-Update
Sopen11g023250	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.03	Orthogroups_2024-Update
Sopen12g011680	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.04	Orthogroups_2024-Update
Sopen12g011940	No alias	Integrase core domain	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015074	DNA integration	IEA	InterProScan predictions
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR001584	Integrase_cat-core	789	899
IPR005162	Retrotrans_gag_dom	254	347
IPR023780	Chromo_domain	1093	1146

External Links

No external refs found!