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  5. Sopen12g018680

Sopen12g018680


Description : Reverse transcriptase (RNA-dependent DNA polymerase)


Gene families : OG_42_0000008 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen12g018680
Cluster HCCA clusters: Cluster_270

Target Alias Description ECC score Gene Family Method Actions
Cre01.g045850 No alias cysteine-rich RLK (RECEPTOR-like protein kinase) 8 0.03 Orthogroups_2024-Update
LOC_Os01g32470 No alias retrotransposon protein, putative, unclassified 0.02 Orthogroups_2024-Update
Mp8g00200.1 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.02 Orthogroups_2024-Update
MpVg00320.1 No alias No annotation 0.02 Orthogroups_2024-Update
Sopen06g011320 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.04 Orthogroups_2024-Update
Sopen07g005860 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0015074 DNA integration IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR013103 RVT_2 839 1082
IPR001584 Integrase_cat-core 478 591
IPR025724 GAG-pre-integrase_dom 407 461
No external refs found!