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  5. Sopen12g018830

Sopen12g018830


Description : SBP domain


Gene families : OG_42_0000135 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000135_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen12g018830
Cluster HCCA clusters: Cluster_193

Target Alias Description ECC score Gene Family Method Actions
A4A49_19670 No alias squamosa promoter-binding-like protein 6 0.03 Orthogroups_2024-Update
A4A49_27951 No alias squamosa promoter-binding-like protein 8 0.03 Orthogroups_2024-Update
Brara.D00262.1 No alias SBP-type transcription factor 0.03 Orthogroups_2024-Update
Brara.E01026.1 No alias SBP-type transcription factor 0.03 Orthogroups_2024-Update
Glyma.02G121300 No alias Squamosa promoter-binding protein-like (SBP domain)... 0.05 Orthogroups_2024-Update
Glyma.18G005600 No alias squamosa promoter binding protein-like 2 0.04 Orthogroups_2024-Update
LOC_Os08g39890 No alias OsSPL14 - SBP-box gene family member, expressed 0.02 Orthogroups_2024-Update
PSME_00036287-RA No alias (at1g02065 : 120.0) Encodes an SBP-box gene, a member of... 0.03 Orthogroups_2024-Update
Potri.014G057800 No alias squamosa promoter binding protein-like 10 0.05 Orthogroups_2024-Update
Potri.016G048500 No alias squamosa promoter binding protein-like 9 0.02 Orthogroups_2024-Update
Pp1s194_53V6 No alias squamosa promoter binding protein 3 0.03 Orthogroups_2024-Update
Pp1s252_40V6 No alias squamosa promoter-binding 0.02 Orthogroups_2024-Update
Seita.3G022100.1 No alias SBP-type transcription factor 0.04 Orthogroups_2024-Update
Seita.7G190000.1 No alias SBP-type transcription factor 0.03 Orthogroups_2024-Update
Sobic.002G257900.1 No alias SBP-type transcription factor 0.02 Orthogroups_2024-Update
Sobic.004G058900.1 No alias SBP-type transcription factor 0.04 Orthogroups_2024-Update
Solyc02g077920 No alias Colorless non-ripening 0.03 Orthogroups_2024-Update
Solyc07g062980 No alias Squamosa promoter-binding protein, putative (AHRD V3.3... 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan predictions
CC GO:0005634 nucleus IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR004333 SBP_dom 93 166
No external refs found!