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  5. Sopen12g019360

Sopen12g019360


Description : gag-polypeptide of LTR copia-type


Gene families : OG_42_0000008 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen12g019360
Cluster HCCA clusters: Cluster_8

Target Alias Description ECC score Gene Family Method Actions
HORVU5Hr1G106200.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Solyc09g056140 No alias No description available 0.02 Orthogroups_2024-Update
Solyc09g059360 No alias No description available 0.02 Orthogroups_2024-Update
Sopen01g003530 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen01g005210 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen01g011350 No alias Domain of unknown function (DUF4219) 0.03 Orthogroups_2024-Update
Sopen01g012650 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen01g021460 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen04g013740 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen07g008090 No alias Integrase core domain 0.03 Orthogroups_2024-Update
Sopen07g014860 No alias gag-polypeptide of LTR copia-type 0.03 Orthogroups_2024-Update
Sopen07g016720 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen09g026670 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen10g022510 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen11g016310 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen12g022840 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001878 Znf_CCHC 230 247
IPR013103 RVT_2 710 779
IPR025724 GAG-pre-integrase_dom 401 455
No external refs found!