Sopen12g019380

Description : gag-polypeptide of LTR copia-type

Gene families : OG_42_0000008 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen12g019380
Cluster	HCCA clusters: Cluster_335

Target	Alias	Description	ECC score	Gene Family Method
Kfl00239_0190	kfl00239_0190_v1.1	no hits & (original description: no original description)	0.02	Orthogroups_2024-Update
LOC_Os01g71840	No alias	retrotransposon protein, putative, unclassified, expressed	0.02	Orthogroups_2024-Update
Sopen01g013200	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.03	Orthogroups_2024-Update
Sopen04g009050	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.05	Orthogroups_2024-Update
Sopen07g014860	No alias	gag-polypeptide of LTR copia-type	0.03	Orthogroups_2024-Update
Sopen08g018030	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.04	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
MF	GO:0008270	zinc ion binding	IEA	InterProScan predictions
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR001878	Znf_CCHC	230	247

External Links

No external refs found!