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  5. Potri.012G031100

Potri.012G031100


Description : sigma factor E


Gene families : OG_42_0006208 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0006208_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Populus release: Potri.012G031100
Cluster HCCA clusters: cluster_0058

Target Alias Description ECC score Gene Family Method Actions
147096 No alias sigma factor E 0.06 Orthogroups_2024-Update
A4A49_16573 No alias rna polymerase sigma factor sige, chloroplasticmitochondrial 0.04 Orthogroups_2024-Update
At5g24120 No alias RNA polymerase sigma factor sigE,... 0.03 Orthogroups_2024-Update
Bradi2g14790 No alias sigma factor E 0.03 Orthogroups_2024-Update
Brara.F02635.1 No alias basal Sigma-type transcription factor 0.04 Orthogroups_2024-Update
GRMZM2G077436 No alias sigma factor E 0.03 Orthogroups_2024-Update
HORVU1Hr1G093180.1 No alias basal Sigma-type transcription factor 0.04 Orthogroups_2024-Update
Kfl00791_0030 kfl00791_0030_v1.1 (at5g24120 : 128.0) Encodes a specialized sigma factor... 0.02 Orthogroups_2024-Update
LOC_Os05g50930 No alias RNA polymerase sigma factor, putative, expressed 0.06 Orthogroups_2024-Update
Mp3g02240.1 No alias basal transcription factor (Sigma) 0.03 Orthogroups_2024-Update
PSME_00047965-RA No alias (at5g24120 : 162.0) Encodes a specialized sigma factor... 0.03 Orthogroups_2024-Update
Pp1s92_33V6 No alias rna polymerase sigma factor 0.02 Orthogroups_2024-Update
Seita.3G126900.1 No alias basal Sigma-type transcription factor 0.05 Orthogroups_2024-Update
Sobic.009G250400.1 No alias basal Sigma-type transcription factor 0.05 Orthogroups_2024-Update
Solyc03g007370 No alias Sigma factor (AHRD V3.3 *** A0A0G2STU5_9ROSI) 0.06 Orthogroups_2024-Update
Sopen03g003330 No alias Sigma-70 region 3 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEA InterProScan predictions
BP GO:0006352 DNA-templated transcription, initiation IEA InterProScan predictions
BP GO:0006355 regulation of transcription, DNA-templated IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR007630 RNA_pol_sigma70_r4 447 500
IPR007624 RNA_pol_sigma70_r3 364 430
IPR007627 RNA_pol_sigma70_r2 280 346
No external refs found!