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  5. Potri.012G108000

Potri.012G108000


Description : Pentatricopeptide repeat (PPR-like) superfamily protein


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Populus release: Potri.012G108000
Cluster HCCA clusters: cluster_0105

Target Alias Description ECC score Gene Family Method Actions
106991 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.01 Orthogroups_2024-Update
415185 No alias pentatricopeptide (PPR) repeat-containing protein 0.02 Orthogroups_2024-Update
78092 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
93286 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.01 Orthogroups_2024-Update
98388 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.01 Orthogroups_2024-Update
At4g39530 No alias Pentatricopeptide repeat-containing protein At4g39530... 0.02 Orthogroups_2024-Update
Brara.A01167.1 No alias RNA editing factor *(DEK36) 0.03 Orthogroups_2024-Update
Brara.H01750.1 No alias RNA editing factor *(SLO4) 0.03 Orthogroups_2024-Update
GRMZM2G019689 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G121579 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.01G176700 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
HORVU3Hr1G026070.2 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU6Hr1G065970.1 No alias Unknown function 0.02 Orthogroups_2024-Update
PSME_00036148-RA No alias (at2g22070 : 583.0) pentatricopeptide (PPR)... 0.02 Orthogroups_2024-Update
Pp1s103_35V6 No alias MZB10.7; pentatricopeptide (PPR) repeat-containing... 0.01 Orthogroups_2024-Update
Seita.2G001800.1 No alias RNA editing factor *(ELI1) 0.02 Orthogroups_2024-Update
Seita.2G047600.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.4G216600.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Seita.5G424500.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Seita.6G213800.1 No alias RNA editing factor *(DOT4) 0.03 Orthogroups_2024-Update
Seita.7G131800.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Solyc01g081560 No alias LOW QUALITY:Pentatricopeptide repeat-containing protein... 0.03 Orthogroups_2024-Update
Solyc03g114660 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Solyc04g016540 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Solyc04g082870 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Sopen01g002910 No alias PPR repeat 0.03 Orthogroups_2024-Update
Sopen01g032600 No alias PPR repeat family 0.02 Orthogroups_2024-Update
Sopen01g038630 No alias PPR repeat 0.02 Orthogroups_2024-Update
Sopen03g002990 No alias PPR repeat family 0.02 Orthogroups_2024-Update
Sopen04g036510 No alias PPR repeat family 0.03 Orthogroups_2024-Update
Sopen11g001910 No alias PPR repeat family 0.02 Orthogroups_2024-Update
Sopen11g006690 No alias PPR repeat 0.02 Orthogroups_2024-Update
evm.model.tig00001038.5 No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 168 192
IPR002885 Pentatricopeptide_repeat 471 497
IPR002885 Pentatricopeptide_repeat 394 444
IPR002885 Pentatricopeptide_repeat 293 340
IPR002885 Pentatricopeptide_repeat 193 239
No external refs found!